LOCUS NC_018881 8240 bp DNA circular CON 14-DEC-2023
DEFINITION Bacillus thuringiensis Bt407 plasmid BTB_8p, complete sequence.
ACCESSION NC_018881
VERSION NC_018881.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02603279
Assembly: GCF_000306745.1
KEYWORDS RefSeq.
SOURCE Bacillus thuringiensis Bt407
ORGANISM Bacillus thuringiensis Bt407
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus;
Bacillus cereus group.
REFERENCE 1 (bases 1 to 8240)
AUTHORS Sheppard,A.E., Poehlein,A., Rosenstiel,P., Liesegang,H. and
Schulenburg,H.
TITLE Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-
JOURNAL Genome Announc 1 (1) (2013)
PUBMED 23405326
REFERENCE 2 (bases 1 to 8240)
AUTHORS Sheppard,A.E., Poehlein,A., Liesegang,H., Rosenstiel,P. and
Schulenburg,H.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2012) Department of Genomic and Applied
Microbiology, Goettingen Genomics Laboratory,
Georg-August-University-Goettingen, Grisebachstr. 8, Goettingen,
Lower Saxony 37079, Germany
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP003893.1.
Source DNA available from Hinrich Schulenburg, Evolutionary Ecology
Genetics Zoological Institute, CAU Kiel, Am Botanischen Garten 1-9
24118 Kiel, Germany.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Assembly-Data-START##
Assembly Method :: Newbler v. v2.6
Sequencing Technology :: Sanger dideoxy sequencing; 454
##Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 12/14/2023 02:22:29
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 6,598
CDSs (total) :: 6,409
Genes (coding) :: 6,240
CDSs (with protein) :: 6,240
Genes (RNA) :: 189
rRNAs :: 14, 14, 14 (5S, 16S, 23S)
complete rRNAs :: 14, 14, 14 (5S, 16S, 23S)
tRNAs :: 142
ncRNAs :: 5
Pseudo Genes (total) :: 169
CDSs (without protein) :: 169
Pseudo Genes (ambiguous residues) :: 0 of 169
Pseudo Genes (frameshifted) :: 95 of 169
Pseudo Genes (incomplete) :: 72 of 169
Pseudo Genes (internal stop) :: 33 of 169
Pseudo Genes (multiple problems) :: 26 of 169
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..8240
/organism="Bacillus thuringiensis Bt407"
/mol_type="genomic DNA"
/strain="407"
/db_xref="taxon:527021"
/plasmid="BTB_8p"
gene 72..356
/locus_tag="BTB_RS32075"
/old_locus_tag="BTB_8p00010"
CDS 72..356
/locus_tag="BTB_RS32075"
/old_locus_tag="BTB_8p00010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000391901.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000391901.1"
/translation="MEELNKKPQAEMVRVNTRISKEVNGWLDEKSARTGVPKSTLIYL
ALEQYIQQQTMFEELPKLQQMYTQIQQQQMVQGDLLSVVNKDNNLAKFSL"
gene 382..624
/locus_tag="BTB_RS32080"
CDS 382..624
/locus_tag="BTB_RS32080"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000342926.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000340717.1"
/translation="MDDALTKILEKLDQLDKKVDTIGSEVKEIRKEMQAHRMEIDDNF
TKLYKLVEDKDVEIDVLNKRVFKNETTVEKLKRQKH"
gene 695..1048
/locus_tag="BTB_RS32085"
/old_locus_tag="BTB_8p00020"
CDS 695..1048
/locus_tag="BTB_RS32085"
/old_locus_tag="BTB_8p00020"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001179589.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001179589.1"
/translation="MQNIKEIKKLIRKNPGKYASISTTEDGDFEGVLLSGFFAKQVMK
LASQSNHISHDFNSNDLRSSDLTLKGVFLFNGTGVHFVFYEGLESIRIYDSPMFEEDS
KEMFEYFKEWLHAHS"
gene 1149..1397
/locus_tag="BTB_RS32090"
CDS 1149..1397
/locus_tag="BTB_RS32090"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000364675.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000364675.1"
/translation="MDLKTYYANVINELESILLSSEKVCEDNFLKIEQYLSNKSFIEN
DIDYIFYHLDNLECLVKDRVFLEDALKRYREKLDKVKK"
gene 1491..3863
/locus_tag="BTB_RS32095"
/old_locus_tag="BTB_8p00030"
CDS 1491..3863
/locus_tag="BTB_RS32095"
/old_locus_tag="BTB_8p00030"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001162327.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="AAA family ATPase"
/protein_id="WP_001162327.1"
/translation="MALDIAKCGRRTIVLREKATGDVMIRRMSCNQLSCPVCGPVIAA
RLQLRIKYFSQHERLFFFNTITSKDGIDDLEKTFKKIRKELSSDFTIEGYMRRKKVSY
EKALKWYEKKKKKMIDFDIDVELGIYSRKNAIIEVANLKKVYYLGLNVKQKIEFHKKY
NHLVDELFPAIHEVNKRDEILHKQLYERILRRFEENEFEDFKFIRVVELHESGQPHYH
FLCNRYVSHYLMKKITVEGVSEVYDNAYIVDHAMERNKTLTYDTVDTDIVSFYVSKVT
RYVTKETIETFSELEKEGDIAKKLISSSNCIKLFDEKDEEESKYKKLGVYDYQINATS
YEVPKVLENSVEDFIKFHSVMLRDQYAIDLLKFSKSLDLDDFINCNYVIHERLIQVSV
AEYKNKLSTVFDETDLTKEQLELLKSFVENKITLLLGRAGTGKTYTLVNLLKKLKPNP
RTTFILTYTGKASVRIKELLSQHELTEYKPMTVHKACSSNWNSNFLKNEYNNLECEYL
IIDEVGMIPRDILMKVLLAVPSYTKIIFAGDDAQLPPVNDSSVIPELEGLDFINTIRL
TKVFRSGDTVLELAYKVLNRELIDFRLYDEKQLEKLVLPLVEQGYQILTNTKKMTKKI
NLIVQANKDKITKCFNDYCYEIGDRVMIIANDSSRRVYNGDTGKIVDYDDKGILIQLD
FEDRQVFYRYLDTVNIVPAYAFTVHKSQGSEYENVAVFLESQPKLNTNNLLYTGITRA
KKNIKVYVPDEKVLSTMINCVPEPVSNITLNNVFDLVNGILDIKKTSSMG"
gene 4002..4199
/locus_tag="BTB_RS32100"
CDS 4002..4199
/locus_tag="BTB_RS32100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000274139.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000274139.1"
/translation="MYGAYLDPEDRDRIMGSLSDEQQEYLRIFLKRGNQTAFSSVLAR
LKGGESEEDAEHISTQWMFIE"
gene 4281..5021
/locus_tag="BTB_RS32105"
/old_locus_tag="BTB_8p00040"
CDS 4281..5021
/locus_tag="BTB_RS32105"
/old_locus_tag="BTB_8p00040"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000182379.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF3895 domain-containing protein"
/protein_id="WP_000182379.1"
/translation="MTNKILKFSKDHFKKHTGLPSSIVKAVLKGMYKIDCELDEILIK
ISSGWSLFENLGMDSIPNDLIMPIDIREHLELDLPLLERQVMRLKGDLRSYNSLKKNI
VEKNDSVDFEINEEREEGQASLFDEDIVFGFNLDDDNVQTIRSQPVKVKPVSIEKNIS
YQFLSFVEQEFILQFIQNVNSVSVRQLCEFMIKEVGSLDKRYLTGKPHIYVHVCSYLD
FLVTQGKLSYIENLDYIDRIYYIESDIS"
gene complement(5053..5193)
/locus_tag="BTB_RS35215"
CDS complement(5053..5193)
/locus_tag="BTB_RS35215"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000130115.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000130115.1"
/translation="MTDKKERVEMRIPQSILKKVDEYKEENGISTRTATILELIRKGL
NK"
gene 5304..5555
/locus_tag="BTB_RS32110"
CDS 5304..5555
/locus_tag="BTB_RS32110"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000888627.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000888627.1"
/translation="MLEDKFLESKIKKLTNQNVVVFTDDEIIEGVLLDKDTGEERLFE
VFRKIWGKNFAWFGEGIYIQCEDTVTFRDYDEVDNIFKK"
gene 7706..8227
/locus_tag="BTB_RS32115"
/old_locus_tag="BTB_8p00050"
CDS 7706..8227
/locus_tag="BTB_RS32115"
/old_locus_tag="BTB_8p00050"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000234812.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF3967 domain-containing protein"
/protein_id="WP_000234812.1"
/translation="MVIIYQTTKQAAQTLNINHTTFKKYYGMFERYTGYNFLRDSKGQ
VMFSEYDLEVFKRLLLVKAEPGRTIEESCRLVGEEFGISDKNRVITDISPENGGDNKA
IEELKELILMQNNKIDELTIKLNEQSNQTKMIETSVGDRDQQLVRLMKEMLEVKRMVA
ASNKKRWWHFFRK"
CONTIG join(CP003893.1:1..8240)
//
