LOCUS NP_388405 463 aa linear CON 12-FEB-2021
DEFINITION putative PLP-dependent transcriptional regulator [Bacillus subtilis
subsp. subtilis str. 168].
ACCESSION NP_388405
VERSION NP_388405.1
DBLINK BioProject: PRJNA76
BioSample: SAMEA3138188
DBSOURCE REFSEQ: accession NC_000964.3
KEYWORDS RefSeq.
SOURCE Bacillus subtilis subsp. subtilis str. 168
ORGANISM Bacillus subtilis subsp. subtilis str. 168
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1
AUTHORS Borriss,R., Danchin,A., Harwood,C.R., Medigue,C., Rocha,E.P.C.,
Sekowska,A. and Vallenet,D.
TITLE Bacillus subtilis, the model Gram-positive bacterium: 20 years of
annotation refinement
JOURNAL Microb Biotechnol 11 (1), 3-17 (2018)
PUBMED 29280348
REFERENCE 2 (residues 1 to 463)
AUTHORS Belda,E., Sekowska,A., Le Fevre,F., Morgat,A., Mornico,D.,
Ouzounis,C., Vallenet,D., Medigue,C. and Danchin,A.
TITLE An updated metabolic view of the Bacillus subtilis 168 genome
JOURNAL Microbiology (Reading, Engl.) 159 (Pt 4), 757-770 (2013)
PUBMED 23429746
REFERENCE 3 (residues 1 to 463)
AUTHORS Barbe,V., Cruveiller,S., Kunst,F., Lenoble,P., Meurice,G.,
Sekowska,A., Vallenet,D., Wang,T., Moszer,I., Medigue,C. and
Danchin,A.
TITLE From a consortium sequence to a unified sequence: the Bacillus
subtilis 168 reference genome a decade later
JOURNAL Microbiology (Reading, Engl.) 155 (Pt 6), 1758-1775 (2009)
PUBMED 19383706
REFERENCE 4 (residues 1 to 463)
AUTHORS Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G.,
Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S.,
Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C.,
Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V.,
Carter,N.M., Choi,S.K., Cordani,J.J., Connerton,I.F.,
Cummings,N.J., Daniel,R.A., Denziot,F., Devine,K.M., Dusterhoft,A.,
Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C.,
Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S.,
Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A.,
Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K.,
Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S.,
Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D.,
Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y.,
Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K.,
Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M.,
Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N.,
Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D.,
O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V.,
Pohl,T.M., Portelle,D., Porwollik,S., Prescott,A.M., Presecan,E.,
Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M.,
Rivolta,C., Rocha,E., Roche,B., Rose,M., Sadaie,Y., Sato,T.,
Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J.,
Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B.,
Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K.,
Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Togoni,A.,
Tosato,V., Uchiyama,S., Vandebol,M., Vannier,F., Vassarotti,A.,
Viari,A., Wambutt,R., Wedler,H., Weitzenegger,T., Winters,P.,
Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K.,
Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A.
TITLE The complete genome sequence of the gram-positive bacterium
Bacillus subtilis
JOURNAL Nature 390 (6657), 249-256 (1997)
PUBMED 9384377
REFERENCE 5 (residues 1 to 463)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 6 (residues 1 to 463)
AUTHORS Genoscope -,C.E.A.
CONSRTM AMAbiotics and Genoscope
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2013) A. Danchin, AMAbiotics, Bldg G1, 2, rue
Gaston Cremieux, 91000 EVRY antoine.danchin@normalesup.org Bldg G1
Genoscope / CEA (Commissariat a l'energie atomique et aux energies
alternatives): BP 191 91006 EVRY cedex - FRANCE (E-mail:
seqref@genoscope.cns.fr - Web: www.genoscope.cns.fr)
REFERENCE 7 (residues 1 to 463)
AUTHORS Genoscope -,C.E.A.
CONSRTM Institut Pasteur and Genoscope
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2009) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
REFERENCE 8 (residues 1 to 463)
AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A.
TITLE Direct Submission
JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Genetique des
Genomes Bacteriens, Institut Pasteur, 28 rue du Docteur Roux, 75724
Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr,
antoine.danchin@normalesup.org Phone: +33 (0)1 45 68 84 41, Fax:
+33 (0)1 45 68 89 48
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CAB12331.
On or before Mar 17, 2009 this sequence version replaced
gi:32468687, gi:32468690, gi:32468695, gi:32468704, gi:32468715,
gi:32468723, gi:32468738, gi:32468743, gi:32468745, gi:32468758,
gi:32468767, gi:32468778, gi:32468787, gi:32468796, gi:32468802,
gi:32468809, gi:32468813, gi:32468825, gi:32468830, gi:32468833,
gi:32468840, gi:38680335.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software), TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation platform
http://www.genoscope.cns.fr/agc/microscope.
The large cluster comprising the i, h and g rDNA regions could not
be properly resolved, we therefore incorporated the original
sequence of rRNAihg in the final assembly.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..463
/organism="Bacillus subtilis subsp. subtilis str. 168"
/strain="168"
/sub_species="subtilis"
/type_material="type strain of Bacillus subtilis"
/db_xref="taxon:224308"
Protein 1..463
/product="putative PLP-dependent transcriptional
regulator"
/function="16.3: Control"
/function="16.8: Protect"
/calculated_mol_wt=53394
Region 12..462
/region_name="ARO8"
/note="DNA-binding transcriptional regulator, MocR family,
contains an aminotransferase domain [Transcription, Amino
acid transport and metabolism]; COG1167"
/db_xref="CDD:224089"
CDS 1..463
/gene="ydeL"
/locus_tag="BSU_05240"
/old_locus_tag="BSU05240"
/coded_by="NC_000964.3:571389..572780"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 3: Putative function from multiple
computational evidences; PubMedId: 15223311, 28348215;
Product type r: regulator"
/transl_table=11
/db_xref="EnsemblGenomes-Gn:BSU05240"
/db_xref="EnsemblGenomes-Tr:CAB12331"
/db_xref="GOA:P96669"
/db_xref="InterPro:IPR000524"
/db_xref="InterPro:IPR004839"
/db_xref="InterPro:IPR015421"
/db_xref="InterPro:IPR015422"
/db_xref="InterPro:IPR015424"
/db_xref="InterPro:IPR036388"
/db_xref="InterPro:IPR036390"
/db_xref="SubtiList:BG12139"
/db_xref="UniProtKB/Swiss-Prot:P96669"
/db_xref="GeneID:939904"
CONTIG join(WP_003234223.1:1..463)
ORIGIN
1 mditpflnrt ldiplyqqly ryfkenmhrg riqkgmklps krllanqlsi sqttveraye
61 qlaaegyivs kprsgwfady hdsdfaydrm psttpiqqea eenkqwidfh ygnvdssyfp
121 fsawrksmvn sldqyghely rpghvlgefe lrtliaeyly qsrgvhcgpe qviigagnpi
181 llqilcqvfe pnisigyedp gyprarkife anrmnivpip vddegiciqk ikeqqpnlvy
241 vtpshqftlg timtinrriq llkwaaenqs fiieddydge frytgqpvps lqgldqhnrv
301 iymgtfsksl lpslrisymi lpspllkkgh eitslykqtv schsqltlae fikngewqkh
361 inrmrklyrk kraivleavq relgehvrir gensglrill dvylpfgeke liekakkhgv
421 kiypvslsyq hhpptktvsl gfagvsesdi regikklkaa wki
//
