GenomeNet

Database: RefSeq
Entry: NP_463163
LinkDB: NP_463163
Original site: NP_463163 
LOCUS       NP_463163                451 aa            linear   CON 28-SEP-2017
DEFINITION  alpha-galactosidase [Salmonella enterica subsp. enterica serovar
            Typhimurium str. LT2].
ACCESSION   NP_463163
VERSION     NP_463163.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
            Assembly: GCF_000006945.2
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 451)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 451)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2016) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 451)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 451)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to AAL23122.
            RefSeq Category: Reference Genome
                        CLI: Clinical Isolate
                        MOD: Model Organism
                        PRT: Proteomics
                        TYS: Designated Type Strain
                        UPR: UniProt Genome
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..451
                     /product="alpha-galactosidase"
                     /EC_number="3.2.1.22"
                     /calculated_mol_wt=50604
     Region          4..449
                     /region_name="PRK15076"
                     /note="alpha-galactosidase; Provisional"
                     /db_xref="CDD:185035"
     CDS             1..451
                     /gene="melA"
                     /locus_tag="STM4298"
                     /coded_by="NC_003197.2:4542414..4543769"
                     /note="alpha-galactosidase. (SW:AGAL_SALTY)"
                     /transl_table=11
                     /db_xref="GeneID:1255824"
CONTIG      join(WP_001520868.1:1..451)
ORIGIN      
        1 mmtapkitfi gagstifvkn ilgdvfhrea lksahvalmd idetrleesh ivvrklmdsa
       61 gasgritcht nqkaalqdad fvvvafqigg yepctvtdfe vckrhgleqt iadtlgpggi
      121 mralrtiphl wricedmtev cpkatmlnyv npmamntwam yaryphikqv glchsvqgta
      181 eelardlnid ptslryrcag inhmafylel erktadgtyv nlypellaay dagqapkpni
      241 hgnercqniv ryemfkklgy fvtessehfa eytpwfikpg redliarykv pldeypkrcv
      301 eqlanwhkel eeyktaerid ikpsreyast imnalwtgep sviygnvrne glidnlpqgs
      361 cvevaclvda ngiqptkvgt ipshlaammq tninvqtllt eailtenrdr vyhaammdph
      421 taavlgieei yalvddliaa hgdwlpawlr r
//
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