LOCUS       XM_005473454            2938 bp    mRNA    linear   VRT 26-JUL-2018
DEFINITION  PREDICTED: Oreochromis niloticus centrosomal protein 78 (cep78),
            transcript variant X2, mRNA.
ACCESSION   XM_005473454
VERSION     XM_005473454.4
DBLINK      BioProject: PRJNA354796
KEYWORDS    RefSeq.
SOURCE      Oreochromis niloticus (Nile tilapia)
  ORGANISM  Oreochromis niloticus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini;
            Oreochromis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_031977.2) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 26, 2018 this sequence version replaced XM_005473454.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oreochromis niloticus Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Oreochromis niloticus"
                     /mol_type="mRNA"
                     /isolate="F11D_XX"
                     /db_xref="taxon:8128"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /linkage_group="LG12"
     gene            1..2938
                     /gene="cep78"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 40 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100697004"
     CDS             161..2539
                     /gene="cep78"
                     /codon_start=1
                     /product="centrosomal protein of 78 kDa"
                     /protein_id="XP_005473511.1"
                     /db_xref="GeneID:100697004"
                     /translation="MVQDSAQIRRQGAQDFMAYYEFACARQESVPLPAVKMNLNKGML
                     DFNGDKLKLTDWPPVLSSISINKHLHHIAISSTHQASLASGEADRRYLKSSFRRKIPA
                     IRSKDMTLKLCKALRECLTVSPNLKTLQLNGLPLRERDLITLTKGLAKSTSLENLSLV
                     NCPISDEGLEVICQSVKYSTNIRTVDFSGCSLTWRGAEHMANIIKHQGMQRHGTAWAE
                     SLRYRQPQFEGMGGLRRVTLNCNTLIGDRGAAALASELAEDLWVKAVDLQRCGLSNEG
                     ARRLLEALKTNSSLCVLDIRGNPLVDKLLIKTIIEKVLMNGHGQSPEYCWIKPAASEP
                     QRACGPRRRALPSTVRGKAAFRIATHKGPSPGGRSSAAALKPKPSRTPHVPWRAAARA
                     GRQRGLPPGITVTDHSFQGAATVKVTMESDSEAEEDDEEEVVEVEPRPSSLNRQDRVI
                     ARRFEQMQMELKECRMRLGEERRARLKAESRLMEYELENARLRDANHSLSEALGASGS
                     ALAPPASSALEDEAILESIETSFTKFHAFLDLLKDAGLGQLASMAGIDKSDFQPLGRP
                     QLSSTIEPLLHGAASPPAGHYGIDALSLVGGAPSAAPVGLSDTSLHKSPSPNRAAFHK
                     ERSLDVTFTRASAPSASAVVDVEEANNFSKPDTQHDSGSEHSFYSQKSFDNISCGKTS
                     QTRPSHPTSNSNSHRNNSSHGYSFSNSYAYNRASHSNGSRGGSSASVSDILSDKEESV
                     GSVGSRNRGKGRLVTVGQSGSEGSERKAPSRRGALQQVRSLESLGVQSDNES"
     misc_feature    <491..1054
                     /gene="cep78"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     Region: PPP1R42; cl42388"
                     /db_xref="CDD:455733"
ORIGIN      
        1 tagagctgca aatggcacag tgaggaagaa gtgggcgtgg gtttgctggc actacagcgc
       61 cacttttgag cggtcgttta tgttgtcaac aataacagac cgctgaagtt gtcaagcagc
      121 gtcgaggaag agtcatacat cagtcccgcg acgatcaaag atggtccagg acagcgctca
      181 gattcggcgg cagggtgctc aggactttat ggcttactat gagtttgcct gtgccaggca
      241 ggaatctgtc ccccttcctg cagttaaaat gaacctcaac aaagggatgc tggactttaa
      301 tggagacaag ctgaagctaa cagactggcc acccgttctc agctctatat ccattaacaa
      361 acacctgcac cacatagcaa taagtagcac acaccaagct agtttggctt ctggagaggc
      421 agatagaaga tatcttaagt ctagcttcag gaggaagatt ccagctattc gctccaagga
      481 tatgacgtta aagctgtgca aggccctcag agagtgcctc actgtctctc ccaacctcaa
      541 gacgctgcag ctcaatggac ttccactgag agaaagggac ctcatcaccc tgacaaaggg
      601 tttggcaaaa agcacttcct tggaaaacct atctctggtt aactgtccaa tcagtgatga
      661 gggcttagag gtcatttgcc aaagcgttaa gtattctact aacatcagga cagtggattt
      721 tagtggatgc agtcttacct ggaggggggc agagcacatg gccaatatta tcaagcatca
      781 gggtatgcaa agacatggta cggcgtgggc ggagtctctg aggtatcgac agccgcagtt
      841 tgagggtatg ggaggtcttc gccgtgtcac acttaactgt aacactttaa ttggggaccg
      901 gggtgctgcg gcgcttgcaa gtgaacttgc tgaagacctc tgggttaaag ctgtggacct
      961 gcaaagatgt ggtctttcca acgaaggcgc tcgtcgtttg ctagaagcct tgaaaacaaa
     1021 ttcttctttg tgtgttctgg atatccgtgg taacccgtta gttgataaac tcctaattaa
     1081 aactataata gagaaagtac taatgaatgg tcatggacag tcaccagagt actgctggat
     1141 caagcctgca gcatcagaac cacagagagc ttgtggtcca aggaggagag cattacccag
     1201 tacagtcaga gggaaagctg catttagaat agccactcat aaaggaccat ctcctggagg
     1261 acggagttca gctgctgctc tgaaacctaa gccatcacgc accccccatg tgccttggcg
     1321 tgctgctgca cgagctggac gccaaagagg tttgcctcct ggaattactg taacagacca
     1381 tagctttcag ggtgcagcca cagtgaaagt taccatggag tcggattcag aggcagagga
     1441 ggatgatgaa gaggaagtgg tggaagtgga accgagacca tcttctctta atcgtcagga
     1501 cagagtcatt gcacggaggt ttgaacaaat gcagatggag ctaaaagagt gccgtatgag
     1561 gctcggagaa gagcggaggg ccagactgaa ggctgagtcc aggctcatgg agtatgagct
     1621 ggagaatgct cgacttcgag atgccaatca ctccctgtca gaggcacttg gtgccagtgg
     1681 ctctgcatta gcaccaccag cttccagtgc tcttgaagat gaggcaattc tggagagcat
     1741 tgagacatca ttcactaagt ttcacgcttt cctggatttg ctcaaagatg ctggcttagg
     1801 tcagctagct tcaatggctg gaattgacaa gtcagatttt cagcctctgg gaagacctca
     1861 gctttcctcc acaatagaac cacttttgca tggagcagca tcaccgcccg cagggcatta
     1921 cgggatcgat gctctgtctt tggtaggagg tgccccatct gccgcccccg ttggattgtc
     1981 tgacaccagc ttgcacaagt ctccatcccc aaatagagca gcctttcata aagaaaggtc
     2041 acttgatgta actttcactc gggcttctgc accatcagca agtgctgttg tggatgtaga
     2101 agaagcaaat aatttttcaa agcctgacac ccagcatgac tcaggctctg aacacagttt
     2161 ttatagccaa aagtcctttg ataatatttc ttgtggtaaa acttcccaga ctaggccgag
     2221 ccaccccacg agcaacagca actctcacag aaacaacagt tcccatggat acagcttcag
     2281 caacagctac gcttacaacc gtgcttccca tagcaatgga tctcgtggtg gttcgtctgc
     2341 aagtgttagt gacattttaa gtgacaaaga agagtctgta ggatcagtag ggtcaaggaa
     2401 cagggggaaa ggaaggctgg tgacagttgg tcagtcagga tcagaagggt cagagaggaa
     2461 agccccttct aggagaggcg ctctacagca ggtcagatct ctggagagtc tgggggttca
     2521 gtcagataat gaatcctaac cagccgacca tgaactttgt ccctgtgtgt cagtgccttt
     2581 tcttctaagt ttagattttt gctgatttta ggttgtagat ttttttgtca ccttcataaa
     2641 ttttttgttc tatttttttg cattttcagt ccaaatcatt acagtttagg gaaacgatgt
     2701 ttttaaaagc atcttgtttc atttaaacca aaataaataa gtgataaaaa tgagccttat
     2761 attattgttt ttacatttta gatttacatt tacagtctta ttgacctttt tcataaagtg
     2821 cagggaatct gcagtataac agtttaattc agtgcgacat tctcaaatct gtaactcggt
     2881 ttcttcaagt ataatcctga ttcatgtagc gatccgtcaa atactagaaa gtttacaa
//