LOCUS XM_016674091 2903 bp mRNA linear VRT 03-MAY-2016
DEFINITION PREDICTED: Poecilia formosa centrosomal protein 78 (cep78),
transcript variant X1, mRNA.
ACCESSION XM_016674091
VERSION XM_016674091.1
DBLINK BioProject: PRJNA237006
KEYWORDS RefSeq.
SOURCE Poecilia formosa (Amazon molly)
ORGANISM Poecilia formosa
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
Poeciliidae; Poeciliinae; Poecilia.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_006800028.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Poecilia formosa Annotation Release
101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 7.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2903
/organism="Poecilia formosa"
/mol_type="mRNA"
/db_xref="taxon:48698"
/chromosome="Unknown"
/sex="female"
gene 1..2903
/gene="cep78"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 5 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 9 samples with support for all annotated
introns"
/db_xref="GeneID:103141755"
CDS 250..2595
/gene="cep78"
/codon_start=1
/product="centrosomal protein of 78 kDa isoform X1"
/protein_id="XP_016529577.1"
/db_xref="GeneID:103141755"
/translation="MVQNSAQIRRQGPHDFLAYYEFLCAKQDSVPLNAVKINLDKGML
DFNGDKLKLVDWPPILESISINKHLRHIAISSTFQGGLAFADSDISYGKYGSRRKIPP
ICSKDMTFKLCKALRECLTVSPCLKTLHLHGLPLRERDLITLTKGLAESSSVENVSLA
NCPISDNGLEIICQSVKYSTSIRLVDFTGCNLTWIGAEHMANIIKHQAMQRHSAAWAE
SLRYRLPQFDVMSGLRRITLNGNSLIGDRGAAALAHELTEDLWVKAVDLQKCGLSNEG
ARRLLEALKTNSSLCVLDIRNNPLVDKVLIKTVIEKVLMIAKGQSSEYCWIKPTSTES
QKASGPKRGVIPVTVRRRSTYRKASLKGTSGGQSSAVAQPKKLSSRSSMIPWRAAARA
GRQRGLPPGVTVLNQSFEGAAAVEVTVESDSEGEDSESEEVVVEVGQTSSSLGATDRI
TGQQYDRIQMELKECRLSLAAERRARLRAESRLKECELEKGYLRDANRSLSEALGAPG
SGSALRTFSSLEDESVLESIENSFNKFHAFLDLLKDAGLGQLASMAGINTSDFQPLGK
PQLSSTVGPQQEAAASTTAGQFRDVQAQSHSASLAGRVTPFPPGAAAFFPTCQPPSLH
KDRLVDVTFNHTGLDAAAPALPGEEEPHQYFRPATQPDSGSEHSQKSFDHFPFGKTFQ
SQPSRQEMEASSNRSSSYHGNSISNNSMYSGESQINSTHGGFPESVSEIMSDKGESLG
SVSSGNRRLMFGQPGSEGSERGAYSLNQIGSLGGQSVDKFL"
misc_feature 586..>1158
/gene="cep78"
/note="protein phosphatase 1 regulatory subunit 42;
Region: PPP1R42; cl42388"
/db_xref="CDD:455733"
ORIGIN
1 agaagaggaa gtgggcgctg acggagcaac agcgccactt ttgagctcgt cattaaccgt
61 tataaacaca ccgtaaagat ggtaaagaaa ccagcctaaa cacaacccta gagttatgtc
121 ttttcgatag agtctccaga catacaaata agaaagaggt gtttttgatt tggttcagga
181 aaatgtttcc tgcatattct tacaatgact gttaaatgaa tcataaattg gtttgaatcg
241 aggtcaaaaa tggttcaaaa cagtgctcag attcgacggc agggtcctca tgacttcctg
301 gcatactatg agtttttatg tgcaaagcag gactcagttc ctctcaatgc tgtaaagata
361 aacttagaca aaggaatgct ggactttaac ggagacaagc tgaaattagt ggactggccg
421 cctatcctcg agtctatatc catcaacaag cacctgcgtc acattgcaat aagcagcaca
481 tttcagggag gtctagcttt tgcagattca gatataagtt acggtaagta tggcagcagg
541 aggaagatcc cgcccatttg ctccaaggac atgacattta aactgtgtaa ggctctgaga
601 gagtgtctca ctgtctctcc ctgcctcaag actctgcatc ttcacggact tcctttgaga
661 gagagggacc ttatcacttt aacaaagggt ttggcagaaa gctcttccgt ggaaaacgtt
721 tctctggcta actgtcccat ctctgataac ggcttagaaa tcatttgcca aagtgtgaaa
781 tattctacaa gcattagatt ggtggatttc actgggtgca atctaacctg gataggagcg
841 gagcacatgg ccaatatcat caagcaccag gcgatgcaga gacacagcgc tgcgtgggca
901 gagtccctga ggtatcgact gcctcagttc gatgtaatga gcggcctccg tcgcatcact
961 ttaaacggaa actctttgat cggggatcgc ggtgctgctg ctctagcaca tgagctgacc
1021 gaggacctgt gggttaaagc ggtggatcta cagaagtgtg gtctgtccaa tgaaggagct
1081 cgtcgtttgt tagaagctct gaaaacgaat tcctctctgt gtgtgttgga tatccgcaat
1141 aaccctttag ttgacaaagt tttaattaaa actgtgatcg agaaagtact aatgatcgct
1201 aagggacaat catccgagta ctgctggata aaaccaacta gcacagagtc acaaaaagcg
1261 tctgggccaa aaagaggagt catacccgtt acagtaagac gaagatcaac atacaggaaa
1321 gcttctctta aaggaacctc tggaggtcag agttcagctg ttgctcagcc caagaagctc
1381 tcttctcgct ccagtatgat tccatggcgt gctgctgcac gagctggacg ccaaagaggt
1441 cttcctcctg gtgttaccgt cttaaaccag agctttgagg gtgcggcggc ggtcgaagtc
1501 actgtggagt ctgactcaga gggcgaggac agtgaaagtg aagaagtggt ggtggaagtg
1561 gggcagacgt cgtcttctct tggagccacg gacagaataa ctggacaaca gtacgatcgc
1621 attcagatgg agctaaagga gtgccgtctg agtttggcag cggagcgcag ggctcgacta
1681 agagcagagt ccaggctcaa ggagtgcgag ttggagaagg gctaccttcg tgatgccaac
1741 cgttcgctgt ctgaagctct aggagctcct ggctctggat cagcacttcg gactttcagc
1801 tctcttgaag acgagtcagt cctggagagc atcgagaact cattcaacaa gttccacgcc
1861 ttcctggatc tcctcaagga tgcaggcctt ggtcagctgg catcaatggc cgggatcaac
1921 acctccgatt tccagcctct tggaaaacct cagctgtcct ctacagtggg accacagcag
1981 gaagctgccg cctcaacgac cgcaggccag ttcagggacg ttcaagcaca gtctcatagc
2041 gcttctttgg caggtagagt gacacctttt cctcctggtg cagcagcctt ctttcccact
2101 tgtcagcctc cttccttgca taaagacaga ttagtggatg tgacctttaa tcacactgga
2161 ttagacgcag cagccccggc gctgcctgga gaggaggagc cgcatcaata ttttcggcct
2221 gctacgcagc ccgactccgg ctctgagcac agccagaagt cctttgacca ttttccgttt
2281 ggtaaaacct tccagtctca accaagcagg caggagatgg aggccagctc caacagaagc
2341 agcagttacc acggaaacag cataagcaac aactccatgt acagtggaga gtctcagatc
2401 aacagcaccc acggaggctt ccctgagagt gtcagcgaga ttatgagtga caagggagag
2461 tctctggggt cagtgagcag tgggaatagg aggctgatgt ttggtcagcc ggggtcagag
2521 gggtcggaga gaggagctta ctctctgaat caaatcggat ctcttggagg tcagtcagtt
2581 gataagttct tgtgatgtta catggaaatg taataatcct actttgtcag acttttctgt
2641 aacttgtctg ttttgtactg gttgaaacat tagtacggaa actggtggcc ttttcaattt
2701 ttttgtaaga caatatcagg agtgttgctt tttttaagag actgacgtga accagagaag
2761 cagtggctct ttctttttag cgtacgatta gaaatattta gcaaagtaag agtagatccc
2821 tgggcttccg aatcaacacc acctcagtat agtgttcgta tctgtgctgt tccagtaatc
2881 taataaaatg cttgcctgct tta
//
