LOCUS XP_001828819 206 aa linear PLN 28-AUG-2017
DEFINITION exoribonuclease [Coprinopsis cinerea okayama7#130].
ACCESSION XP_001828819
VERSION XP_001828819.1
DBLINK BioProject: PRJNA29797
BioSample: SAMN02953595
DBSOURCE REFSEQ: accession XM_001828767.1
KEYWORDS RefSeq.
SOURCE Coprinopsis cinerea okayama7#130 (Coprinus cinereus okayama7#130)
ORGANISM Coprinopsis cinerea okayama7#130
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
Agaricomycetes; Agaricomycetidae; Agaricales; Agaricineae;
Psathyrellaceae; Coprinopsis.
REFERENCE 1 (residues 1 to 206)
AUTHORS Stajich,J.E., Wilke,S.K., Ahren,D., Au,C.H., Birren,B.W.,
Borodovsky,M., Burns,C., Canback,B., Casselton,L.A., Cheng,C.K.,
Deng,J., Dietrich,F.S., Fargo,D.C., Farman,M.L., Gathman,A.C.,
Goldberg,J., Guigo,R., Hoegger,P.J., Hooker,J.B., Huggins,A.,
James,T.Y., Kamada,T., Kilaru,S., Kodira,C., Kues,U., Kupfer,D.,
Kwan,H.S., Lomsadze,A., Li,W., Lilly,W.W., Ma,L.J., Mackey,A.J.,
Manning,G., Martin,F., Muraguchi,H., Natvig,D.O., Palmerini,H.,
Ramesh,M.A., Rehmeyer,C.J., Roe,B.A., Shenoy,N., Stanke,M.,
Ter-Hovhannisyan,V., Tunlid,A., Velagapudi,R., Vision,T.J.,
Zeng,Q., Zolan,M.E. and Pukkila,P.J.
TITLE Insights into evolution of multicellular fungi from the assembled
chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
JOURNAL Proc. Natl. Acad. Sci. U.S.A. (2010) In press
PUBMED 20547848
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (residues 1 to 206)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 206)
AUTHORS Stajich,J.E., Pukkila,P., Dietrich,F., Farman,M., Gathman,A.,
Hoegger,P., Kilaru,S., Kues,U., Lilly,W., Mackey,A.J.,
Muraguchi,H., Rehmeyer,C., Stanke,M., Velagapudi,R., Wilke,S.,
Borodovsky,M., Guigo,R., Young,S.K., Kodira,C.D., Zeng,Q.,
Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z.,
Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A.,
Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L.,
Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T.,
White,J., Yandava,C., Galagan,J., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (11-JUN-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
REFERENCE 4 (residues 1 to 206)
AUTHORS Birren,B., Nusbaum,C., Abebe,A., Abouelleil,A., Adekoya,E.,
Ait-zahra,M., Allen,N., Allen,T., An,P., Anderson,M., Anderson,S.,
Arachchi,H., Armbruster,J., Bachantsang,P., Baldwin,J., Barry,A.,
Bayul,T., Blitshsteyn,B., Bloom,T., Blye,J., Boguslavskiy,L.,
Borowsky,M., Boukhgalter,B., Brunache,A., Butler,J., Calixte,N.,
Calvo,S., Camarata,J., Campo,K., Chang,J., Cheshatsang,Y.,
Citroen,M., Collymore,A., Considine,T., Cook,A., Cooke,P.,
Corum,B., Cuomo,C., David,R., Dawoe,T., Degray,S., Dodge,S.,
Dooley,K., Dorje,P., Dorjee,K., Dorris,L., Duffey,N., Dupes,A.,
Elkins,T., Engels,R., Erickson,J., Farina,A., Faro,S., Ferreira,P.,
Fischer,H., Fitzgerald,M., Foley,K., Gage,D., Galagan,J.,
Gearin,G., Gnerre,S., Gnirke,A., Goyette,A., Graham,J.,
Grandbois,E., Gyaltsen,K., Hafez,N., Hagopian,D., Hagos,B.,
Hall,J., Hatcher,B., Heller,A., Higgins,H., Honan,T., Horn,A.,
Houde,N., Hughes,L., Hulme,W., Husby,E., Iliev,I., Jaffe,D.,
Jones,C., Kamal,M., Kamat,A., Kamvysselis,M., Karlsson,E.,
Kells,C., Kieu,A., Kisner,P., Kodira,C., Kulbokas,E., Labutti,K.,
Lama,D., Landers,T., Leger,J., Levine,S., Lewis,D., Lewis,T.,
Lindblad-toh,K., Liu,X., Lokyitsang,T., Lokyitsang,Y., Lucien,O.,
Lui,A., Ma,L.J., Mabbitt,R., Macdonald,J., Maclean,C., Major,J.,
Manning,J., Marabella,R., Maru,K., Matthews,C., Mauceli,E.,
Mccarthy,M., Mcdonough,S., Mcghee,T., Meldrim,J., Meneus,L.,
Mesirov,J., Mihalev,A., Mihova,T., Mikkelsen,T., Mlenga,V.,
Moru,K., Mozes,J., Mulrain,L., Munson,G., Naylor,J., Newes,C.,
Nguyen,C., Nguyen,N., Nguyen,T., Nicol,R., Nielsen,C., Nizzari,M.,
Norbu,C., Norbu,N., O'donnell,P., Okoawo,O., O'leary,S.,
Omotosho,B., O'neill,K., Osman,S., Parker,S., Perrin,D.,
Phunkhang,P., Piqani,B., Purcell,S., Rachupka,T., Ramasamy,U.,
Rameau,R., Ray,V., Raymond,C., Retta,R., Richardson,S., Rise,C.,
Rodriguez,J., Rogers,J., Rogov,P., Rutman,M., Schupbach,R.,
Seaman,C., Settipalli,S., Sharpe,T., Sheridan,J., Sherpa,N.,
Shi,J., Smirnov,S., Smith,C., Sougnez,C., Spencer,B., Stalker,J.,
Stange-thomann,N., Stavropoulos,S., Stetson,K., Stone,C., Stone,S.,
Stubbs,M., Talamas,J., Tchuinga,P., Tenzing,P., Tesfaye,S.,
Theodore,J., Thoulutsang,Y., Topham,K., Towey,S., Tsamla,T.,
Tsomo,N., Vallee,D., Vassiliev,H., Venkataraman,V., Vinson,J.,
Vo,A., Wade,C., Wang,S., Wangchuk,T., Wangdi,T., Whittaker,C.,
Wilkinson,J., Wu,Y., Wyman,D., Yadav,S., Yang,S., Yang,X.,
Yeager,S., Yee,E., Young,G., Zainoun,J., Zembeck,L., Zimmer,A.,
Zody,M. and Lander,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2003) Whitehead Institute/MIT Center for Genome
Research, 320 Charles Street, Cambridge, MA 02142, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to EAU93085.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..206
/organism="Coprinopsis cinerea okayama7#130"
/strain="okayama7#130"
/db_xref="taxon:240176"
/chromosome="1"
/map="unlocalized"
Protein 1..206
/product="exoribonuclease"
/calculated_mol_wt=21917
Region 10..203
/region_name="Csl4"
/note="Exosome complex RNA-binding protein Csl4, contains
S1 and Zn-ribbon domains [Translation, ribosomal structure
and biogenesis]; COG1096"
/db_xref="CDD:224021"
Region 62..152
/region_name="S1_like"
/note="Ribosomal protein S1-like RNA-binding domain. Found
in a wide variety of RNA-associated proteins. Originally
identified in S1 ribosomal protein. This superfamily also
contains the Cold Shock Domain (CSD), which is a homolog
of the S1 domain. Both domains...; cl09927"
/db_xref="CDD:447859"
Site order(73,81,103,105)
/site_type="other"
/note="RNA binding site [nucleotide binding]"
/db_xref="CDD:238094"
CDS 1..206
/locus_tag="CC1G_06805"
/coded_by="XM_001828767.1:1..621"
/db_xref="GeneID:6005245"
ORIGIN
1 msttstqqqv llpgqqisvr apapqlgtgt ysrdaqiras llgapklqgs tltipqvrph
61 ppapnsvvlg svtrlsplqa flsitvvdgi plpageeftg virsqdvrat ekdrvkigdc
121 frggdvvrgv vislgdarsy fittarndlg viyatseagk srshltirlv sdlatgatle
181 pvswqemrcp ktgkiekrkc akpenm
//
