KEGG   Rhizobium etli CFN 42: RHE_CH04124
Entry
RHE_CH04124       CDS       T00317                                 
Symbol
rho
Name
(GenBank) transcription termination factor protein
  KO
K03628  transcription termination factor Rho
Organism
ret  Rhizobium etli CFN 42
Pathway
ret03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ret00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHE_CH04124 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ret03021]
    RHE_CH04124 (rho)
   03019 Messenger RNA biogenesis [BR:ret03019]
    RHE_CH04124 (rho)
Transcription machinery [BR:ret03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RHE_CH04124 (rho)
Messenger RNA biogenesis [BR:ret03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RHE_CH04124 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT DUF6360 Spore_III_AA AAA
Other DBs
NCBI-ProteinID: ABC92867
RhizoBase: RHE_CH04124
UniProt: Q2K2R9
Position
complement(4378630..4379895)
AA seq 421 aa
MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagcaaatccccgacggatcttctggctttc
gccgaatcgctcgaggtcgagaatgcaagcacgatgcgcaagcaggagctgatgtttgcg
atcctcaaaatgcttgcgagccaggatgtggaaatcatcggcgaaggggtcgtcgaggtg
cttcaggacggtttcggcttcctgcgttcggcgaatgcaaactacctgcccggtcctgac
gacatctacatctcgccgtcgcagatccgccgtttctcgctgaaaaccggcgacacggtc
gaaggaccgattcgcgggccgaaggaaggcgagcgttatttcgcgctgctcaaggtcaac
accatcaatttcgacgatccggaaaagattcgtcacaaggttcatttcgacaacctgacg
ccgctctacccgaacgagcgcttcaagatggaactcgagatcccgacctcgaaggatctg
tcgccgcgtgtgatcgatctggtggcaccgctcggcaagggccaacgcggactgatcgtc
gcgccgccgcgcaccggtaagaccgtgcttctccagaacatcgcgcattcaatcacggcc
aaccatccggaatgttatctcattgtccttctgatcgacgagcggcccgaggaagtgacc
gacatgcagcgctcggtccgcggggaggttatctcctcgaccttcgacgagccggcagtg
cgtcacgtccaggtggccgaaatggtcatcgaaaaagcaaagcgtctggtcgagcatggg
cgcgacgtcgtcatcctgctcgactcgattacacgcctcggccgcgcctataacacggtc
gttccctcctccggcaaggtcctgacgggcggcgtcgatgccaacgcgctgcagcggccg
aagcgtttcttcggcgccgcgcgcaacattgaggaaggtggttctctgacgatcatcgct
accgcgctgatcgatacgggcagccgcatggacgaagtcatcttcgaagaattcaagggt
accggcaactccgaaatcgtccttgaccgcaaggttgccgacaagcgcatcttcccggcg
atggatattctgaaatccggcacgcgtaaggaagaccttcttgttccgcgccaggatctg
cagaagattttcgttctgcgtcgtattctcgcgccgatgggcacgaccgatgcgatcgaa
ttcctaatcgacaaactcaaacagacgaagaataattcggacttcttcgactcgatgaac
acctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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