KEGG   Rubrivivax gelatinosus: RGE_13680
Entry
RGE_13680         CDS       T01803                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit DnaE
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rge  Rubrivivax gelatinosus
Pathway
rge03030  DNA replication
rge03430  Mismatch repair
rge03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rge00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RGE_13680 (dnaE)
   03430 Mismatch repair
    RGE_13680 (dnaE)
   03440 Homologous recombination
    RGE_13680 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rge03032]
    RGE_13680 (dnaE)
   03400 DNA repair and recombination proteins [BR:rge03400]
    RGE_13680 (dnaE)
Enzymes [BR:rge01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RGE_13680 (dnaE)
DNA replication proteins [BR:rge03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RGE_13680 (dnaE)
DNA repair and recombination proteins [BR:rge03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RGE_13680 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: BAL94709
UniProt: I0HNX2
Position
1401520..1405029
AA seq 1169 aa
MPFVHLRTHTEYSVVDGTLRIDDAADAAKADGQPALAITDLSNLFGAIKFYKACRGAGVK
PVVGVDVWMDPLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTQNVQRNQAWLKWEWL
RELSGGLIAMSGADMGAVGQALLAGDEERAAAAARELADIFPGRFYLELQRAGLPTNEAQ
VRAAVPLAARLGLPVVATHPIQFLGPDDFEAHEARVCIAEGETLANPKRIKRFTREQHFK
TAEQMQALFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPIEVYFRKASHEGL
EKRLAALFPKEEERDKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIVWAKANGCPVGP
GRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIRYVKE
KYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGKTVTLAKVPEKP
DPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVLIAPGKITDFCP
LYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQYIVARRPNMKDFSYETL
PLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALYRPGPMDLIPTF
VARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKK
AEEMAKHRAIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTAWIKV
HCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDVNTGTLRFEPIEDKRIRYGLG
AVKGTGAGAIEAIVAAREGRSGDGGGPFRSLFDFCARVDRQRVNKRVVEALIKAGAFDSL
HADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAVEPWSVRERLMQ
EKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSVAGIVSELRVINGQRGRVAI
FKLDDGSEAIEAVANEELLDASRELLREDELVIVVGKLQPDRFSGGLRLNAQQVWDLATA
RARFGRYLSVEVNGGLPPVADVLKLWPARRVETEEGETQQGLAVRLKLKRATAVGELDLG
SDARFWPCDEALARWKTIAEQGRASIVYE
NT seq 3510 nt   +upstreamnt  +downstreamnt
atgcccttcgttcacctgcggacgcacaccgagtattccgtcgtcgacggcaccttgcgc
atcgacgacgcggccgacgccgccaaggccgacggccagccggcgctggccatcaccgac
ctgtccaacctcttcggcgcgatcaagttctacaaggcctgccgcggcgcgggcgtcaag
cccgtcgtcggcgtcgacgtctggatggacccgctgcccgacgccgccgagcgccagccg
acgcgcctggcgctgctggtgcaggaccgcggcggctacctgaacctctgcgagctgctg
gcgcgcgcctggacgcagaacgtgcagcgcaaccaggcctggctgaagtgggaatggctg
cgcgagctctcgggcgggctgatcgcgatgtccggtgccgacatgggcgccgtcggccag
gcgctgctggccggcgacgaggagcgtgccgctgccgccgcgcgcgagctggccgacatc
tttccgggccgcttctatctggagctgcagcgtgccggtttgccgaccaacgaggcccag
gtgcgggccgcggtgccgctggccgcgcgtctggggctgccggtcgtcgccacgcacccg
atccagttcctcggccccgacgacttcgaggcccacgaggcgcgggtctgcatcgccgaa
ggcgagacgctggccaaccccaagcgcatcaagcgcttcacgcgcgagcagcacttcaag
accgccgagcagatgcaggccttgttcgccgacgtgcccagcgcgatcgcgaacacggtg
gagatcgcgcgccgctgcagcctgacgctggtgctgggcaagccgcgcctgcccgacttc
ccgacccccgacggctcgccgatcgaggtctatttccgcaaggcctcgcacgaagggctg
gagaagcgcctggcggcgctgttcccgaaggaggaagagcgcgacaagcgccgccccgag
tacgtcgagcgcctggagttcgagctcgacaccatcttgaagatgggtttcccgggctac
ttcctcatcgtctcggacttcatcgtctgggccaaggccaacggctgcccggtgggcccg
ggccgcggctcgggcgcgggctcgctggtcgcctacgcgctgttcatcaccgacctcgac
ccgctgcagtacaagctgctgttcgagcgcttcctgaacccggagcgcgtgtcgatgccc
gacttcgacatcgacttctgccagggcaaccgcgaccgtgtgatccggtacgtgaaggag
aagtacggccgcgacgcggtgggccagatcgcgaccttcggcacgatggccgccaaggcc
gcgctgcgcgacgtcggccgcgtgctgggcatgggctacggccacgtcgacagcatcgcc
aagctgatcccggcgccgccgggcaagacggtgacgctggccaaggtgcccgagaaaccc
gaccccggcatcatctacgcgcgccaggaagaacccgagatcgaccgccgcgaggccgcc
gaggaggaagtggccgagctgctgtcgctggccacgcgtgtcgaaggcatggtgcgcaac
atcggcatgcacgccggcggcgtgctgatcgcgccgggcaagatcaccgacttctgtccg
ctgtaccagcagcccggcagcgacagcgcggtcagccagtacgacaaggacgacgtcgag
gccatcggcctggtgaagttcgactttctggggctggcgacgctgacgatcctggagctg
gcgcgccagtacatcgtcgcgcggcggccgaacatgaaggacttcagctacgagacgctg
ccgctggacgaccagcgtgtctacaagctcttctccgacggcctgaccgaggcggtgttc
cagttcgaatcgcgcggcatgcagggcatgctgcgcgaggccaagcccagccggctggaa
gacctgatcgcgctgaacgcgctgtaccgcccgggcccgatggacctgatcccgaccttc
gtcgcgcgcaagcacggcaaggagacggtcgagtacccgcacccgctgctggagaccgtg
ctcggcgagacctacggcgtcatggtctaccaggagcaggtgatgcagacggcgcaggtg
ctgggcggctattcgctcggcggcgccgacttgctgcgccgcgcgatgggcaagaagaag
gccgaggagatggccaagcaccgcgcgatcttccgcgagggtgcggccaagaaggacatc
cccgaagcgaaggccgacgaggtcttcgacttgatggagaagttcgccggctacggcttc
aacaagtcgcacgcggccgcgtactcgctgctggcctatcacacggcctggatcaaggtg
cactgcacggccgagttcttcgcggccaacatgacgatcgaagccgacaacaccgacaag
ctgaaggtgctgctggccgacgccaagctgttcggcatccgcttcgatccgcccgacgtc
aacaccggcacgctgcgtttcgagccgatcgaggacaagcgcatccgctacggcctgggt
gccgtcaagggcaccggcgcgggtgcgatcgaggccatcgtcgcggcgcgcgaaggccgc
tcgggcgacggcggcggcccgttccgcagcctgttcgacttctgcgcgcgggtcgaccgc
cagcgtgtcaacaagcgtgtcgtcgaggcgctgatcaaggccggtgccttcgactcgctg
cacgccgaccgcgccgcgacgctggccagcgtcggcctggctttcgagtgggccgacacg
caggccgccaacaaggaccagggcgggctgttcgacttcggcgacgcgcacggatcgagc
acgcaggagccggcgctggtcgccgtggagccgtggtcggtgcgcgagcggctgatgcag
gagaagatcgccatcggcttctacctgtcgggccatctgttcgacgcctgccgcgacgag
gtgcgcaagttcgttcgccgcgacatcgtcgagctggtcgactcgcgcgagccgcagtcg
gtggccggcatcgtctccgagctgcgtgtcatcaacggccagcgcgggcgtgtcgcgatc
ttcaagctcgacgacggcagcgaggccatcgaggccgtggccaacgaggaactgctggac
gccagccgcgagctgttgcgcgaagacgaactggtcatcgtcgtcggcaagctgcagccc
gaccgcttctccggcggcctgcgcctgaatgcgcagcaggtctgggacctggcgacggcg
cgtgcgcgtttcggccgctacctgtcggtggaggtcaacggtggcctgccgccggtagcc
gacgtgctgaagctgtggccggcgcgccgcgtcgagaccgaggagggcgagacccagcaa
ggcctggcggtgcggctcaagctcaaacgtgcgacggccgtcggcgagctcgacctcggc
agcgacgcacgcttctggccctgcgacgaggcgctggcgcgctggaaaacgatcgccgag
caggggcgcgcatccatcgtctacgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (34)   

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