KEGG   Sinorhizobium fredii NGR234: NGR_c00660
Entry
NGR_c00660        CDS       T00888                                 
Name
(GenBank) DEAD/DEAH box protein, ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
rhi  Sinorhizobium fredii NGR234
Pathway
rhi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NGR_c00660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rhi03019]
    NGR_c00660
   03009 Ribosome biogenesis [BR:rhi03009]
    NGR_c00660
Enzymes [BR:rhi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     NGR_c00660
Messenger RNA biogenesis [BR:rhi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NGR_c00660
Ribosome biogenesis [BR:rhi03009]
 Prokaryotic type
  rRNA helicases
   NGR_c00660
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: ACP23870
UniProt: C3MF33
Position
complement(71654..73555)
AA seq 633 aa
MTEFEGIAPAIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGLALGP
TLLGPARQFDSPGAPLALVIAPTRELALQVKRELEWLYEITGATIASCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIRRDSLDISALRAIVLDEADEMLDLGFREDLEFILEASPTER
RTLMFSATVPRSIATLAKNYQRDAVRIGVASEQKQHGDIEYRSLLVAPSDRENAIINVLR
YYDARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERNHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPTNPDTLLHRSGRTGRAGQKGVSALIVPVNQRRKAERLL
DGARITATWAKPPSAEDVTGRDDERLIADAAFDEPLRDDEQTIVQALIDRHGAEKLAAAF
VRQFRSSRSAPEELSDVPLFDDRKKARRDAPAFTGDSAAAPRADFTDGQWFSLSVGRKQN
AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVELTADGAERFLTAIGPNRTLEKGIRVK
TLPGAPDGSRPRDDKPEFAKKRPRPAEAQPERGQKDFQPKRKFEKKPPVSQDTNPEKRDE
KPWSKKKGKPDARKAAGDFKPKAKRNNAKNRQA
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgacagagttcgaagggatcgcaccggcgatcgccgaggcgttggcgaaacgcggttac
aacaccctgacaccggtccagcaggccatgctcgacccggcgctcgagggcgccgacgcc
ctggtttccgcccagaccggctccggcaagaccgtcgccttcggcctggcgctcgggccg
acattgctcggaccggcgaggcagttcgattcacccggcgcgccgctggcgctcgtcatt
gcgccgacgcgcgaactggcgctgcaggttaagcgcgagctcgaatggctctacgagatc
acgggagcgacgatcgcgtcctgcgtcggcggcatggatatccgcagcgagcggcgcgcg
ctcgaacgcggcgcccatatcgtcgtcggcaccccgggccggctctgcgaccatatccgc
cgcgactcgctcgacatctccgcgcttcgcgcgattgtcctcgacgaagccgacgaaatg
cttgacctcggcttccgcgaggatctggagttcattctcgaagcgtcgccgaccgagcgc
cgcacgctgatgttctcggcaaccgtgccgcgctcgatcgcgacgctcgcgaagaactac
cagcgcgacgcggtgcgcatcggggttgcctccgaacagaagcagcacggcgacatcgaa
taccgatcccttctcgtcgcgccgagcgatcgggaaaacgccatcatcaacgtgcttcgt
tactacgacgcccgcaatgcgatcgtcttctgttcgacccgcgccgcggttaaccacctg
accgcccgcttcaacaatcgcggcttctcggtcgtggcgctctcgggcgaactcagccag
aacgaacgcaatcatgcgcttcaggcgatgcgcgacggccgcgcccgggtctgcatcgcg
accgatgtggcggcgcgcggtatcgacctgccgggcctcgagctcgtcatccatgccgac
ctgccgaccaatccggacacgctgctgcaccgcagcggccgcaccggccgcgccggccag
aagggcgtcagcgcgttgatcgtgccggtcaaccagcggcggaaggcggagcgactgctg
gatggcgctcgcatcaccgccacctgggcaaagccgccgtcggcagaagacgtcacaggc
cgcgacgacgagcgtctcatcgccgatgcggccttcgacgagccgctgcgcgacgacgaa
cagacaatcgtccaggcgctgatcgatcgccatggcgccgagaagctcgccgccgccttc
gtgcggcagttccgctcgagccgttccgcccccgaggagctttccgacgtccccctcttc
gacgaccgcaagaaagcccgccgcgacgccccggctttcaccggcgacagcgccgccgcg
ccgcgcgcggacttcaccgacgggcaatggttctcgctctcggtcgggcgcaaacagaat
gccgaaccgcgctggctgatcccgatgctctgccgccatggcaagctcagcaaacgcgac
atcggcgcaatccgcatgcagccggaggaaacctatgtcgaactgacggccgacggcgcc
gagcgcttcctcacggcgatcggcccgaaccggacgctggagaagggcattcgcgtcaag
acgctgccgggcgccccggacggctcgcggccgcgcgacgacaagccagaattcgcgaaa
aagcggccgcggccggcagaggctcagccggagcgcggccaaaaagattttcagccgaaa
cgcaagttcgaaaagaagcctcccgtcagccaggacacgaatccggagaagcgggacgaa
aagccctggagcaagaagaaggggaagcctgacgcaaggaaggcggccggcgacttcaag
ccgaaagccaagcgcaacaacgccaagaaccggcaggcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system