KEGG   Sinorhizobium fredii NGR234: NGR_c11830
Entry
NGR_c11830        CDS       T00888                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rhi  Sinorhizobium fredii NGR234
Pathway
rhi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rhi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NGR_c11830 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhi03021]
    NGR_c11830 (rpoB)
   03400 DNA repair and recombination proteins [BR:rhi03400]
    NGR_c11830 (rpoB)
Enzymes [BR:rhi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NGR_c11830 (rpoB)
Transcription machinery [BR:rhi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NGR_c11830 (rpoB)
DNA repair and recombination proteins [BR:rhi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NGR_c11830 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 DOCK-C2
Other DBs
NCBI-ProteinID: ACP24965
UniProt: C3MAX2
Position
1228517..1232659
AA seq 1380 aa
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFK
SVFPIKDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILSTFYTQSLYQR
DGDGWRVPFQPDALKGQKAIAEMIDADTGEVVVEAGKKLTPRLLRQLQEKGLKALKSTDD
ELYGNYLAEDVVNYETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRNT
LAADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLD
LDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSRFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGNVTSDVVYLSAMEDAKYHVAQANSVLNDDGSFAEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMESVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDLVNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYARLIDMLRGHVAVAGPKGFKKGTELSNAVISEYPRSQWW
MFAVEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGAMLDAYHESGDIKPLRTTIDDVIGSGPKGEPIKQYDDESIVRLAEQTRR
GVSIATPVFDGAVEADVNEMLEKAGLKVTGQSTLYDGRTGDAFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDLGTTAQLPDAAE
NT seq 4143 nt   +upstreamnt  +downstreamnt
atggctcagaccctatcgttcaacggtcgtaggcgcgtacgcaagttttttggtaagatc
cccgaagtcgcagagatgcccaacctcatcgaggtccagaaggcgtcctacgaccagttc
ctcatggtggaagagcccgcaggcgggcgcccggacgagggacttcaagctgttttcaaa
tcggtgtttccgatcaaggatttttcgggcgcttcgatgctcgaattcgtatcctacgaa
ttcgagccgccgaagttcgacgtcgaagaatgccgtcaacgcgacctgacctatgcggcg
ccgctcaaggtgaccctgcggctgatcgtgttcgatatcgacgaagataccggcgccaag
tcgatcaaggacatcaaggaacagaacgtctacatgggcgacatgccgctcatgacggac
aacggtaccttcatcgtcaacggcactgagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgtcttcttcgaccatgacaagggcaagagccactcgtccggcaagctgctcttc
gccgcgcgcgtcattccgtatcgcggttcgtggctcgacatcgaattcgacgccaaggac
atcgtgcatgcccgtatcgaccgtcgccgcaagattccggtgacgtcgctgctgatggcg
ctcggcatggatggcgaggagatcctcagcaccttctatacgcagtcgctctatcagcgc
gacggcgatggctggcgcgtgccgttccagccggatgccctgaagggccagaaggcgatc
gccgagatgatcgatgccgataccggcgaagtcgtcgtcgaggccggcaagaagctgacg
ccgcgcctgttgcggcagttgcaggaaaagggcctgaaggcgctcaagtcgaccgacgac
gagctttatggcaactacctcgccgaggacgtcgtcaactacgaaaccggcgaaatctac
ctggaagccggcgacgagatcgacgagaagacgcttccggtcatcctgtcggccggtttc
gacgagatcccggttctcgacatcgaccacatcaatgtcggcgcctatatccgcaacacg
ctcgctgccgacaagaacgagaaccggcaggatgcgctgttcgacatctatcgcgtcatg
cgcccgggcgagccgccgaccatggattcggccgaagcgatgttcaacgcgctgttcttc
gatgcggagcgctacgacctctcggccgtcggccgcgtgaagatgaacatgcgtctcgac
ctcgacgtgccggacacagtccgcacgctgcgcaaggaagacatcctggcggtcgtcaag
atgctggtcgaactgcgtgacggcaagggcgagatcgacgatatcgacaacctcggcaac
cgccgtgtccgctcggtcggcgagttgatggagaaccagtaccgtctcggcctcctgcgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacaccgtcatgccgcag
gacctgatcaacgcgaagccggccgccgccgccgttcgcgaattcttcggttcctcgcag
ctgtcgcggttcatggaccaggtgaacccgctgtcggaaatcacccacaagcgccgcctt
tcggctcttggcccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
catccgacccactacggccgtatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctggcgaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccggaagatcgtcgacgggaacgtaaccagcgacgtcgtctatctgtcggcgatggaa
gatgcgaagtatcacgtcgctcaggccaactcggtgctgaacgatgatggctcctttgcg
gaagaattcgtcgtctgccgtcatgccggcgaagttatgctggcaccccgcgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgccgcggcgctcatcccgttc
ctcgagaacgatgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggccgtg
ccgctgctgagagccgaggctccgttcgtcggcaccggcatggaatcggtggttgcgcgt
gactccggtgcagcgattgcggcccgtcgcggcggcgtcgtcgaccaggtcgatgcgacg
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtcgggcgtcgatatctac
cgtctgcagaagttccagcgctccaaccagaacacctgcgtcaaccagcgtccgctggtc
accgtcggtgacctggtgaacaagggcgacatcatcgccgatggtccgtcgaccgatctc
ggtgacctggcgctcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgctttccgagcggatcgtgcgcgacgacgtcttcacctcgatc
cacatcgaggaattcgaagtcatggcgcgcgacaccaagctcggcccggaagaaatcacg
cgcgacattccgaacgtctcggaagaagcgctgaagaacctggacgaagccggcatcgtc
tatatcggcgccgaagttcagccgggcgatatcctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcttcg
gatgtccgcgatacgtcgatgcgcatgccgcccggcaccttcggtaccatcgtcgaagtt
cgcgtcttcaaccgccacggcgtggagaaggacgagcgcgccatggcgatcgaacgcgag
gagatcgaacgccttgccaaggaccgcgacgacgagcaggcgatcctcgatcgcaacgtc
tatgcgcgcctgatcgacatgttgcgcggtcacgttgccgttgccggcccaaagggcttc
aagaagggcaccgagctttcgaacgctgtcatcagtgaatatccgcgctcgcagtggtgg
atgttcgccgtcgaggacgagaaggctcaaggcgagatcgaagcgcttcgcgcccagtac
gacgaatccaagtcgcgcctcgaacagcgcttcatggacaaggtcgagaaggtgcagcgc
ggcgacgagatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgc
aagatccagccgggcgacaagatggccggccgccacggcaacaagggtgtggtgtcgcgg
atcgtgccgatcgaagacatgccgttcctcgaagacggcacgcatgtcgacgtggtgctc
aacccgctcggcgttccgtcgcgcatgaatgtcggccagattctcgagacgcatctcggc
tgggcttgcgccggcatgggcaagaagatcggtgcgatgcttgacgcctaccacgaaagt
ggggacatcaagccgctccgcaccacgatcgatgacgtcatcggatcgggcccgaagggc
gagccgatcaagcagtatgatgacgaatcgatcgtgcggctggccgagcagacccgccgc
ggcgtgtcgatcgcaacgccggtcttcgacggcgcggtcgaggccgacgtcaacgagatg
ctggagaaggccggtctgaaggtgacgggtcagtcgacgctctatgacgggcgaaccggc
gatgcgttcgaccggcaggtgactgttggctacatctacatgctgaagctcaaccacctg
gtcgacgacaagatccacgcccgttcgatcggtccgtactcgctcgttacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaggtctgggcgctc
gaggcgtacggcgccgcctacacgctgcaggaaatgctgacggtcaagtcggacgacgtg
gccggccgcaccaaggtctacgaggcgatcgtccgtggcgacgacacgttcgaggcgggc
attccggagagcttcaacgttctcgtcaaggaaatgcgctcgctcggcctctccgtcgag
ttggaaaactcgaaggtcgatgacctcggcaccacggcgcagctgcccgacgcagcggag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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