KEGG   Pseudorhizobium banfieldiae: NT26_2255
Entry
NT26_2255         CDS       T04765                                 
Name
(GenBank) putative ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rht  Pseudorhizobium banfieldiae
Pathway
rht03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rht00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NT26_2255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rht03400]
    NT26_2255
Enzymes [BR:rht01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NT26_2255
DNA repair and recombination proteins [BR:rht03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NT26_2255
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: CCF19979
UniProt: L0NGG3
Position
complement(2206997..2208037)
AA seq 346 aa
MTKRPRKAVAPLLHEHDLPLKSGRVRRRDPKQPELPFDPMPERVEPCLAKLVTKPPHGDE
WSYELKWDGYRLAVHIEPGRVRILTRGGHDWTHRFPGIEEEAKRFSPSTMILDGEAVMFN
ERGIPDFGMLQNSLGGRGGKLPSRNSVLLAFDLLYLDGHDLTRMEHSARRRLLEDVLAEK
TGAIRLSEEFEEDPDQLFRHACVHELEGIIAKHRDRPYRSGRTGDWLKIKCVQRDTFAIV
GYEPSKAVPGAVGSLLLAALKGPDYVYVGSVGTGFSQDQARSLKKQLDKLKTSVPPVRLP
GKNLVSASPSLLAEVEYRAWTHTGTLRHPSFKGLREAEDWAEVYRL
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgaccaagcgccctcgcaaggctgttgcgccactgctccacgagcacgacctgccgctg
aaaagcgggcgcgtcagaaggcgtgatccgaagcagcccgaactaccttttgatcccatg
ccggagcgcgtggagccttgtctcgccaaactggtcaccaagcctcctcatggggatgag
tggtcatatgaactgaagtgggacggctatcgtctcgcggtccacatcgaacccgggcga
gtgcgaatcctcacgcgcggcggccatgactggacgcatcgctttccaggaatcgaggaa
gaggcgaaacggttctcaccatcgacgatgatcctcgacggagaggccgtcatgttcaac
gaacgcggcataccggatttcggaatgctgcagaactcgcttgggggcaggggcggaaaa
ctgccttcacggaactcggtgctgcttgcattcgatctgctctatctggacggccacgac
ctgacgcggatggagcacagcgccaggcgaaggcttcttgaggatgtgctggcggagaag
acgggcgcgatccgtttgtcggaggagttcgaagaagacccggaccaactgttccggcac
gcatgtgtccacgagcttgagggcatcatcgccaagcatcgcgatcgcccataccgatct
ggtcgtaccggggactggctgaagatcaagtgcgtgcagagggacaccttcgccatcgtc
ggctatgagccatccaaggcggtgccaggtgcagtcggcagcctcttgctggcggccctc
aagggccccgactacgtctatgtgggttccgtcgggacaggcttcagtcaggatcaggcg
aggtccctcaagaaacagctcgacaagctgaagacgagcgttccacctgtgcgtctaccg
ggcaaaaacttggtgtcagcgtctccatcgctcttggccgaggtagagtaccgtgcctgg
acccataccggtacgctgcggcatccctccttcaagggacttcgggaggcggaggattgg
gcggaggtataccgcctatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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