KEGG   Rhodoferax koreense: RD110_23065
Entry
RD110_23065       CDS       T04721                                 
Name
(GenBank) ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
rhy  Rhodoferax koreense
Brite
KEGG Orthology (KO) [BR:rhy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rhy03016]
    RD110_23065
Enzymes [BR:rhy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     RD110_23065
Transfer RNA biogenesis [BR:rhy03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    RD110_23065
SSDB
Motif
Pfam: RNB ProQ_C Myosin_N RNase_II_C_S1
Other DBs
NCBI-ProteinID: APW39726
UniProt: A0A1P8K155
Position
4985913..4987985
AA seq 690 aa
MFALFEEAGKFMAGRVLSEAESSAQVELDSGKRVKVKAANLLLKFEKPAPAVLMRDAQTL
AQTIELDLAWEFAPEEDFGFADLAREYFSAHATQEQQVAALFRLYEAPHYFRRAGKGRFR
KAPAEILQLALAAIEKKQQQLQQIANWAEELGRGECPPAIREQLYKILFKPDKNAPEYKA
VVEASRATHTPPLLLLQKAGAIDSPYQFHWRRFLFENFPKGVGFPALEAPLIKDDLPLSP
VQAYSIDDSATTEIDDALSVQGLGSGTVTVGVHIAAPGLALAPGSAIDQVGRARLSTVYM
PGYKVTMLPDAVVQTYTLQEGRDCPAVSLYVTLDEATLEIKASETRLERVHIAANLRHDQ
LDQVVTAEWLENPGFEHENTDLRPGIEREQLSFLYRLAKHLKALREVVRGKPENFNRPDY
NFRLVGNDGAEPTGNEQVLISTRQRGSPLDLIVAEAMILANSTWGGWMADNGVPGIYRSQ
ASLAPGVKVRMGTKALPHAGIGVKSYAWSTSPLRRYTDLVNQWQIIACARHGKTAALAAP
FKPKDAELFSIISMFDAAYAAYNGYQGGMERFWTLKYLQQNGITEVVGTVFKEGLVRADE
LPLVLPVMGTQDLPRGARVRVKLGAIDEITLDVAGTVLERLDAVADAAPPTAEEELDDEE
DAAAGPIAIAVDMEEAEQTETAAAADNPQP
NT seq 2073 nt   +upstreamnt  +downstreamnt
atgtttgcattatttgaagaagctggaaaattcatggccgggcgcgtgctctccgaggcc
gagtcgtcggcccaggtggagctcgacagcggcaagcgtgtcaaggtcaaggccgccaac
ctgttgctgaagttcgagaaacccgcgcccgcggtgctgatgcgcgacgcgcagaccctc
gcccagaccatcgaactcgacctggcctgggaattcgcccccgaggaagacttcggcttc
gccgacctggcgcgcgagtatttcagcgcccatgccacgcaggagcagcaggtcgccgcc
ctgttccggctgtacgaggcaccgcactatttccgccgcgcgggcaaggggcgctttcgc
aaggcgccggccgagatcctgcagctggcactggccgcgatcgagaagaagcagcagcag
ttgcagcagatcgccaactgggccgaggaactcggccgcggcgaatgcccgcccgccatc
cgcgagcagctctacaagatcctcttcaagccggacaagaacgcgccggagtacaaggcc
gtggtcgaggcctcgcgcgccacccacaccccgccgctgctgctgctgcaaaaggccggc
gccatcgattcgccctaccagttccactggcgccgcttcctgttcgagaactttcccaag
ggcgtgggctttcccgcgctcgaggcgccgctcatcaaggacgatctgccgctgtcgccg
gtgcaggcctattccatcgacgactcggccaccaccgagatcgacgacgcactgtcggtg
cagggcctgggcagcggcacggtgacggtcggcgtgcacatcgccgccccgggcctggca
ctcgcgccgggcagcgccatcgaccaggtgggccgcgcgcgcctgtccacggtctacatg
cccggctacaaggtgacgatgctgcccgacgcggtggtgcagacctacacgctgcaggag
ggtcgcgactgtcccgccgtgtcgctgtacgtcacgctcgacgaagccacgctggagatc
aaagcctccgagacgcggctcgaacgcgtacacatcgcggccaacctgcgccacgaccag
ctcgaccaggtggtcacggccgaatggctggaaaaccccggtttcgagcatgaaaacacg
gacctccgcccgggaatagagcgcgagcagctatcgtttttataccgattggccaaacac
ctgaaagccctgcgcgaagtggtgcgcggcaagccggagaatttcaaccggcccgactac
aacttccggctggtcggcaacgacggcgccgagcccacgggcaacgagcaggtcctcatc
agcacgcgccagcgcggctcgccgttggacctgatcgtcgccgaggccatgatcctggcc
aacagcacctggggcggctggatggccgacaacggcgtgcccggcatctaccgcagccag
gccagcctcgcgcccggcgtgaaggtgcgcatgggcaccaaggcgctgccgcatgcgggc
atcggcgtgaagagctacgcctggagcacctcgccgctgcgccgctacaccgacctggtg
aaccagtggcagatcatcgcctgcgcgcgccacggcaagacggccgcgctggccgcgcca
ttcaagcccaaggacgccgaactgttctccatcatctcgatgttcgacgccgcctatgcg
gcctacaacggctaccaaggcggtatggagcgcttctggacgctgaagtatttgcagcag
aacggcatcaccgaagtcgtcggcaccgtgttcaaggaaggcctggtgcgcgccgacgag
ctgccgctggtgctgccggtgatgggcacgcaggacctgccacgcggcgcccgggtgcgg
gtcaagctcggcgcgatcgacgagatcacgctcgacgtggccggcacggtgctcgaacgt
ctggacgccgtggccgatgccgcgccaccaaccgccgaagaggaattggacgacgaagaa
gacgcggcagccggcccgattgcgatcgcggtcgacatggaggaagccgaacagacggaa
accgcggccgccgccgataatccccagccgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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