KEGG   Roseburia intestinalis M50/1: ROI_04280
Entry
ROI_04280         CDS       T02598                                 
Name
(GenBank) helicase, putative, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
rim  Roseburia intestinalis M50/1
Pathway
rim03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    ROI_04280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rim03400]
    ROI_04280
Enzymes [BR:rim01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     ROI_04280
DNA repair and recombination proteins [BR:rim03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     ROI_04280
SSDB
Motif
Pfam: AAA_19 HHH_4 AAA_30 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 HHH_5 nSTAND3 PIF1 UvrD-helicase Helicase_RecD AAA_22 T2SSE NTPase_1 AAA_28 AAA_16 RsgA_GTPase HerA_C AAA SLFN-g3_helicase UvrD_C HHH_2 AAA_24 FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: CBL07724
UniProt: D4KLH2
Position
415414..417627
AA seq 737 aa
MEKTVESLAGYVEHIIYRNADNGYTVLNLVSGEDEITCVGIFSAIAEGENIEAQGEYTEH
PTYGQQFKVTSFEEKAPEDEEAIERYLGSGAIKGIGLAMAARIVRRFKEDTFRIIEEEPE
RLAEIKGISNRKAMEIASQVNEKRDLRQAMIFLQQYGITMNLAVKVYQAYGQDVYGIIRE
NPYRLADDIDGVGFRTADEIAARVGIRMDSDFRVRSGILYTLLQASGEGHTYLPETELTP
RASKLLNVTAEQVEKQYMDLAIERKIILKQMEDQTQIYAASFYYMEANTATMLKRLNVSY
DVSDAEIEQQIRGIEKKSGMTLDEHQVTAVKEAVRNGLLVITGGPGTGKTTTINTIIRYF
ELEGLEIFLAAPTGRAAKRMSETTGFEARTVHRMLELNGGAEGSGGFERDESNPLEADVI
IVDEMSMVDISLMYSLLKAISVGTRLILVGDVNQLPSVGPGSVLRDIIQSHACNVVMLTK
IFRQASTSDIIVNAHKINHGEEVILDNKSMDFFFLKRYDADVIINVVLQLIKQKLPKFVD
ATPYDIQVLTPMRKGLLGVERLNGILQRYMNPPANDKVEKEYGSTVFREGDKVMQTKNNY
QLAWEIRTKFGLTVDKGLGIFNGDMGIIRQINDFAEQMIIEFDEGRMVEYPYKLLDELEL
AYAITIHKSQGSEYPAVVIPLLGGPMMLMNRNLLYTAVTRARKCVTLVGNEVTFQQMIQN
TSQQKRYSGLCDRLKEK
NT seq 2214 nt   +upstreamnt  +downstreamnt
atggagaaaacagtggaaagtcttgcaggatatgtggaacacattatatatcggaatgcg
gataatggatataccgtgttaaatctggtgagcggggaggatgaaatcacctgtgtgggg
atattttcggcaatcgcagagggagaaaatattgaggcacagggggagtacacggaacat
ccgacctatgggcagcagtttaaagtaacaagttttgaggagaaagcacctgaagatgag
gaggcaatagagcggtatcttggttccggtgcaatcaagggaatcgggcttgccatggcg
gcaagaattgtcaggcgttttaaggaggataccttccggatcatagaggaagaaccggaa
cgtctcgctgagatcaaagggatcagtaaccgcaaagcgatggagattgccagccaggtc
aacgaaaagagggatctgcggcaggcgatgatctttttgcagcagtatggaatcacgatg
aatttagcggtcaaggtatatcaggcatacggacaggatgtttatggtatcatccgggaa
aatccgtaccggctggcggacgatattgatggagtcggattccggacggcggatgagatc
gcggcgcgggttggtatccggatggactctgatttccgtgtgcgaagcggaatcctgtat
acactgcttcaggcaagtggggagggacatacctatctgccggagacagagctgacaccg
cgtgcatcaaaattattgaatgttacggcagaacaggtggaaaagcagtacatggatctt
gccattgaaaggaagatcatcttaaaacagatggaagatcagacacagatctatgcagcg
tcattttattatatggaagcaaacacggcgacgatgttaaaacggctcaatgtaagttat
gatgtgtcagatgcggagattgaacagcaaatccgggggatcgaaaagaaaagcggcatg
acgttggatgaacatcaggtaacggcggtcaaagaggcagtgcggaatggtctgcttgtg
atcacgggagggcctggaaccggaaagacgaccacgattaatacgatcatccgctatttt
gaactggagggcttggaaatctttttggcagctccgacagggcgtgcagcaaagcgcatg
agtgagacaacgggatttgaggcgcggacagttcaccgtatgttagagctgaatggggga
gccgagggaagcggtggatttgaaagggatgaaagtaatccactcgaagcggatgtgatc
attgtagatgagatgtcgatggtggatatctcactgatgtattctctgctcaaagcaatc
tctgttggaacgaggctgattcttgtcggggatgtcaatcagcttccgagtgtcggaccg
gggagtgtactccgtgatattatccaatcacatgcctgcaatgtagttatgctgaccaaa
atcttccgtcaggcatccaccagtgatattattgtcaatgcgcataagatcaatcatgga
gaagaagtgatattagataataagagcatggatttctttttcctgaaacggtatgacgca
gatgtgatcatcaatgtggtgctgcagctcattaagcagaaactgccgaagtttgtggat
gcgacgccttatgatatccaggtactgacaccaatgcgcaagggactgcttggcgtagag
cgcctgaatgggattttgcagcgatatatgaatccgcctgccaatgataaagtggagaaa
gaatatggcagcactgtgttccgtgagggggataaagttatgcagacaaagaataactac
cagctcgcgtgggaaatccgtacaaaatttggactcactgtggataaaggccttggaatt
ttcaatggagatatgggaatcataagacagatcaatgatttcgcagaacagatgatcata
gagtttgatgaagggagaatggtagagtacccctataaacttctggatgaacttgagctt
gcctatgcgatcacgatccataaatcacagggaagtgagtatccggcggtcgtcattccg
ctgcttggcggtccgatgatgttaatgaaccggaatctattgtatactgccgtcacgcgt
gcaagaaaatgtgtgacgttagtcggcaatgaagtgaccttccagcagatgatccagaat
acctcacagcagaaaaggtacagcggactctgcgaccgtttaaaagaaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (35)   

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