KEGG   Candidatus Riesia pediculicola: RIEPE_0247
Entry
RIEPE_0247        CDS       T01218                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rip  Candidatus Riesia pediculicola
Pathway
rip03420  Nucleotide excision repair
rip03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RIEPE_0247
   03430 Mismatch repair
    RIEPE_0247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rip03400]
    RIEPE_0247
Enzymes [BR:rip01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RIEPE_0247
DNA repair and recombination proteins [BR:rip03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RIEPE_0247
   MMR (mismatch excision repair)
    Other MMR factors
     RIEPE_0247
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 PhoH DEAD CoV_NSP7
Other DBs
NCBI-ProteinID: ADD79926
UniProt: D4G845
Position
243447..245402
AA seq 651 aa
MIEKLNSKQKEAVTAPSEENILVLAGAGSGKTRVLVHRIIWLLKKIRVSSTSILTLTFSN
KAVLEIRRRVNDIINLCQENLIIDTFHGLAYRFLRVHYSEVNLPYNFQILDSEDQKYFIR
KAIRDSQLEHKRGLLQKSTEYINKNKEKGIRPKDILKKNRIDSSNMDYFKIYLTYQKICD
HSGLVDFPELVLRAYELFLNNSSLLRLYQRRFTHFLIDEFQDTSKLQYKWIRMIFQKSVG
ITIVGDDDQSIYGWRGANPKNMKYFLRDFPNSTVIRLEQNYRSTKNILKSANALISYNKN
RLGKTLWTKIEFGDPIYIYYGNDELDESEYIVKNIIEWNKLGGKFSQCAILYRKKRQSHF
LEEALIKYSIPYHIHGDISFFRRQEIKETMSYLRLIFNRKDDESFERIINTPTRGIGKKT
ISIIRNASKEYSSDMWTTCKKLLNINLLKKNSKTSIKRFLDLINLMDKESESMSIDQKVD
YIFRRSGLSKMYENKKNEISRMKIQNISILVHFIKKFCEDRDERTPSELFHSFLSYSILS
SSNGIKKYEDKNQDAVNLMTLHASKGLEFPFVLISGMEEGTFPVRTDIEQEIAEERRLAY
VGLTRAMKKLILTCVSSRFDRGRKSHNNIPSRFIFEIPQKYVQYVYFKNLN
NT seq 1956 nt   +upstreamnt  +downstreamnt
atgatagagaaactaaattctaaacagaaagaagcagttacagctccttccgaggagaac
atattagttttagcaggtgcaggtagcgggaaaacaagagttttagttcacagaataata
tggcttttaaaaaaaattcgtgtttcttcaacttctattcttacgttgactttttcaaat
aaagctgtactggaaatcagaagaagagtgaatgatatcatcaacctatgtcaggaaaat
ttaatcattgatacgtttcatggtttagcataccgttttttacgagttcattattctgaa
gtaaatttgccttataattttcaaattttagatagtgaggatcaaaaatatttcattcga
aaagcaataagagattctcaactagaacataaaagaggacttttacaaaaatcaacggag
tatattaataaaaataaagaaaaaggaatacgtccgaaggatatcttaaaaaagaatcgt
atcgattcttcgaatatggattattttaaaatatatttaacttatcaaaaaatatgtgat
cattctggattagtagattttccagaattagttttgagagcatatgaattgtttctgaat
aattcaagtcttttaagattgtatcaaagacgttttactcattttcttatagatgaattt
caagataccagtaaattacaatataaatggatcagaatgatttttcaaaaaagtgttgga
attactattgttggagatgatgatcaatctatatatggatggagaggagcgaacccaaaa
aatatgaaatattttttaagggattttccgaactctaccgttattcgtcttgaacaaaac
tatagatctacaaaaaatattttaaaatcggccaatgctttgatttcttataataaaaat
agacttggaaagacgttgtggacgaagatcgaatttggtgatccaatttatatctattat
ggaaatgatgagttggatgaatccgaatatatcgtaaaaaatataatagaatggaataaa
ttaggtggaaaatttagtcaatgtgctattctttacagaaaaaaaagacagtctcatttt
ttagaagaagctttgattaaatactcaattccttaccatatacatggagatataagtttt
tttaggagacaagaaataaaagaaaccatgagctatttgcgtttgatatttaatagaaaa
gatgatgaatcattcgaaaggattatcaatacgccaacaagaggaattggaaaaaaaaca
ataagcataatccgaaatgcttctaaagaatatagttcggatatgtggacaacctgtaaa
aaattgttaaatataaatttactaaaaaaaaattcaaaaacatccatcaaaagattttta
gatttaatcaacttgatggataaggaaagtgaatcaatgtcaatcgatcaaaaggtcgat
tacatatttcgacgatctggtttatcaaaaatgtatgagaataaaaagaacgaaatctct
agaatgaaaattcagaacatttctattttagttcactttataaaaaaattttgcgaagat
agagacgagagaactccttcagagctatttcactcttttctttcctattccatactatca
tcgagtaatggtataaaaaaatatgaagataaaaatcaagatgctgtaaatttaatgaca
ttacacgcttcaaaaggattagagttcccatttgttctcatttctggtatggaggaaggc
acttttcctgtaagaacagacatagaacaagaaatagcagaggaaagaagattggcttat
gtcgggttgactagagcaatgaaaaaactgatacttacgtgtgtttcaagtcgttttgat
cgaggaagaaaaagtcataataatatcccttctcgttttatttttgaaatcccacaaaaa
tatgttcagtacgtttactttaaaaatttgaattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (38)   

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