KEGG   Roseburia intestinalis XB6B4: RO1_05970
Entry
RO1_05970         CDS       T02597                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
rix  Roseburia intestinalis XB6B4
Pathway
rix03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rix00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RO1_05970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rix03019]
    RO1_05970
   03400 DNA repair and recombination proteins [BR:rix03400]
    RO1_05970
Enzymes [BR:rix01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RO1_05970
Messenger RNA biogenesis [BR:rix03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RO1_05970
DNA repair and recombination proteins [BR:rix03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      RO1_05970
SSDB
Motif
Pfam: Helicase_C DEAD HRDC RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: CBL11341
UniProt: D4KVF1
Position
589928..591847
AA seq 639 aa
MEGILNGSDVLGIMPTGAGKSLCYQVPALMLPGITIVISPLISLMSDQVKALNQAGVHAA
YINSSLTENQIRAALLYAAQGQYKIIYVAPERLNTMRFLDFACRADISMVTVDEAHCISQ
WGQDFRPSYLEIADFLARLPRRPVVSAFTATATERVKQDITGSLHLQNPVTVVTGFDRPN
LFFRVVKRKGGKETDNSILNYVKRHEDESGIIYCATKKNVDSVCELLLQHGILAGRYHAG
LSLEERKESQDDFTYDRIRVMVATNAFGMGIDKSNVRYVLHYNMPQSLEYYYQEAGRAGR
DGEEAECVLFFSKQDIMINKRLLDYKATEGGYTAGDPAVRANEQRKLNQMIHYCETDECL
RQYILNYFGDHSPCICEKCSNCVVTEDEAEENYIETGRAKKKTAELADLTEEGQELFEKL
RKCRSELAAKQGVPPFIICSDKTLKDMCARCPADKTQMADVYGMGAQKIASYGESFAEII
RMFLQTHESGNMTTGKTEGAAVVEIVSKPPAGKKKQPFYIAPEKLDQVTFSDACMVSELT
DRINALCEEKDRKKLTAAFVNDLLVQKGYLKEEEQDETRIRRVTEKGIAAGICEEERRSK
FGGGHYYALIHTRESQEMIVAELKAYFTDFPSGSAPAEP
NT seq 1920 nt   +upstreamnt  +downstreamnt
atggaaggcatcttaaatggcagcgacgtcctcggcatcatgccgaccggcgccggaaaa
tcactctgttatcaggttccggcactgatgctgcccggtatcacgatcgtgatctcaccg
ctcatctccttgatgtctgaccaggtcaaggcactgaaccaggcaggcgtacatgcggca
tacatcaacagctcactgacggaaaatcagatccgggcggcgcttttgtatgcggcacag
ggacagtacaagatcatctacgtcgcgccggagcggttaaataccatgcgttttttagat
tttgcatgccgggcagacatttcgatggtgacagtggatgaggcacactgtatttcccag
tggggacaggatttcaggccaagctatttagagattgcagattttcttgcaagactgccg
agacgccctgtggtcagcgcatttacggcgacagcgaccgagcgcgtcaaacaggatatc
acgggaagtctgcacctgcagaatccggtgactgtcgtgaccgggtttgaccggccgaat
cttttcttccgtgtcgtaaagcgaaaaggtggaaaagagacggacaacagtattttaaat
tatgtcaaaaggcatgaggatgagagcgggatcatctactgtgcgacaaaaaagaatgtg
gatagtgtctgtgaacttttattgcagcacggcattctggcagggcggtaccatgcgggg
ctttctttggaagaacggaaagagagtcaggatgattttacctatgacaggatccgtgtg
atggttgcaaccaacgcatttggaatggggatcgacaaatccaatgtgcgttatgttctc
cattataatatgccgcaaagccttgaatattattaccaggaggcgggaagagccgggcgc
gacggggaggaagcggagtgtgtgcttttcttttccaaacaggatatcatgatcaacaaa
cggctgcttgactataaggcgacagagggcggttatacggcaggagatccggcagtccgg
gcaaatgaacagcggaaactgaatcagatgattcactactgtgagacagatgagtgtctg
cgccagtatatcctgaactattttggggatcacagtccgtgcatctgtgaaaaatgcagt
aactgtgttgtgacagaggacgaggcggaggaaaattatatcgagaccggacgtgcaaag
aaaaagacagcagaacttgcagatttaacggaagaagggcaggagctgtttgagaaactg
cgcaaatgccggtcagaacttgctgcaaaacagggtgtgccgccgtttatcatctgttct
gataagacgttgaaagatatgtgtgccagatgtccggcagataaaacacagatggcggat
gtatacggaatgggtgcacagaagattgcaagctacggggagagttttgcagagatcatc
cggatgtttttgcagacacatgaatccggaaatatgactacaggaaagacagaaggagct
gcggtagtagaaattgtgtcgaagcccccggcgggaaaaaagaaacagccgttttatatt
gcaccggaaaaattagatcaggtaacgttttctgacgcctgcatggtatcggaactgacc
gaccggatcaatgcgctctgtgaggaaaaagaccgcaaaaagctgacggctgcttttgtc
aatgatctgctcgtacaaaaaggctatttgaaggaagaggaacaggacgaaacccgcatc
agacgtgtgaccgaaaaaggcattgcagcgggaatatgcgaagaggaaagacggtcaaaa
tttggcggcgggcattattatgcactgatccacacgagggagagtcaggaaatgatcgtg
gcggagctgaaagcatattttactgattttccatccggttcagctccggcagaaccgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (50)   

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