KEGG   Roseobacter litoralis: RLO149_c012690
Entry
RLO149_c012690    CDS       T01572                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
rli  Roseobacter litoralis
Brite
KEGG Orthology (KO) [BR:rli00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rli03032]
    RLO149_c012690 (topA)
   03400 DNA repair and recombination proteins [BR:rli03400]
    RLO149_c012690 (topA)
Enzymes [BR:rli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     RLO149_c012690 (topA)
DNA replication proteins [BR:rli03032]
 Prokaryotic type
  DNA Topoisomerases
   RLO149_c012690 (topA)
DNA repair and recombination proteins [BR:rli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      RLO149_c012690 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom CARME Toprim_4
Other DBs
NCBI-ProteinID: AEI93271
UniProt: F7ZD62
Position
complement(1304227..1306863)
AA seq 878 aa
MPVVVVESPAKAKTINSYLGDNYTVLASYGHVRDLPPKDGSVDPDAGFEMLWEVGYDSRK
HVKAIADALKEDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNAITKAA
VTEAMQNPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVE
REMEIEAFRAREYWSVKALLATPRSQEFEARLTVLAGKKLDRFDIENQTQAELAVQAITS
RDLSVKSVEAKPANRNPSAPFMTSTLQQEASRKFGMGARQTMSTAQRLYEAGYITYMRTD
GIDMAPEAVSAARDAIKTLYGADYVPKSPRIYKNKAKNAQEAHECVRPTDMMTKAEDLKT
SDADQRKLYDLIWKRTLACQMEAARLERTTAEIASEDGQIGLRATGQVMLFDGFLRVYEE
GRDDVAVVDDDDKRLPQIGQGDRLDKRTVTPEQHFTQPPPRYTEATLVKRMEELGIGRPS
TYASVVTTIQDREYVRKDKNRLIPEDKGRLVTAFLSNYFRKYVGYDFTADLEDQLDTVSA
GNADYKEVLGRFWRDFSAAIAETADLRITEVLEKINEVLEPHLFPANEDGTDPRLCPNCG
AGRLSMRTARSGGAFIGCSNYPECRYTRAFGPPGEEDDSGIPPEGKLLGEDGEDKIYAFK
GRFGPYVQRGEVTEDNKKPPRQSIPKDWPPEDVDLPQALKLLSLPREIGPHPEDGITVWA
NIGRYGPYIKHAPSTSDRGGTNANLEGIDEVFTVGMNRAVQLLAEKLASRGQRGGAAKTL
RDLGEHPEEGGPIAIMEGKYGPYVKWEKVNATLPKDSDPAGLTMEAAVALIDEKAASKGK
KRRKAAPKKTAAKKTATKKAAPKKTAPKKKAQAKKAEE
NT seq 2637 nt   +upstreamnt  +downstreamnt
atgccggttgttgtcgtcgaatcccctgctaaagccaagacaatcaattcgtatctgggt
gacaattatactgtcctcgcctcttacggtcatgtgcgggatttgccccccaaagacggc
tccgttgaccccgacgccggttttgagatgctttgggaagtcggttatgacagccgcaaa
cacgtcaaggccatcgctgatgcgctgaaagaagacaatgcgctgatccttgcaactgac
cccgaccgtgaaggcgaagcgataagctggcacctccaggaggcgctgacgaaacgcaaa
tccatcaaaaaagatacgccggtcagccgcgtggtcttcaacgcgatcaccaaagccgcc
gtgacggaagcgatgcagaacccgcgtcaggtggatatgccgctggttgaggcatacctc
gcccgccgcgcgttggactatctggttggtttcaacctcagcccggtgttgtggcgcaaa
ctgcccggtgcgaagtccgcaggccgcgtgcaatcggttaccctacgcctgatcgtagag
cgcgagatggaaatcgaagcgttccgcgcgcgcgaatactggtccgtcaaagcactcctt
gccaccccgcgcagccaggaattcgaagccaggctcaccgttctcgcgggcaagaagctt
gaccggttcgacatcgaaaaccagacgcaggccgaattggccgtgcaagccatcaccagc
cgcgacctgagcgtcaaatcggtggaggcaaaaccggccaacagaaacccctcggccccc
tttatgacatcgacgctgcaacaggaggcaagccgcaagttcggcatgggcgcgcgccag
acgatgagcaccgcgcagcggctttatgaagcgggctatatcacctacatgcggaccgac
gggatcgacatggcccccgaagcggtgagtgctgcgcgcgatgcgatcaagacgctgtat
ggtgccgattacgttccaaaaagcccgcgcatctacaaaaacaaggccaagaacgcgcag
gaagcgcatgaatgtgtccgaccgacggacatgatgaccaaggccgaggacctcaagaca
tctgacgcggatcagcgcaagctctatgacctgatctggaaacgcacccttgcatgccag
atggaagcggcgcgtctggagcgtacgacggccgaaatcgcaagcgaagacggacagatt
ggcctgagagcaaccggtcaggtcatgttgttcgacggtttcctgcgcgtctacgaagaa
ggccgtgacgacgtggccgtggtcgatgatgacgacaagcgcctgccacagattggtcag
ggcgaccgcttggacaaacgcaccgtcaccccggagcagcactttacccagccgccgccc
agatacaccgaagccacgctggtcaaacgcatggaagagttaggcattggcagaccctca
acctatgcctctgttgtgacgacgattcaggaccgtgaatacgtccgcaaggacaagaac
cgcctcatccccgaggacaaaggccggttggtcactgcgtttctaagcaattatttccgc
aaatacgtcgggtatgatttcacagccgaccttgaggatcagcttgatacggtcagcgcg
ggaaatgcggattacaaggaagtgctggggcggttctggcgcgatttctcggctgcaatc
gccgagacggcagatctgcggattactgaggttctcgaaaaaatcaacgaggtgcttgaa
ccacatctgttcccggcgaatgaagatggaacggacccgcgcctgtgccccaactgcggt
gcggggcgtctgagcatgcgcacggcccggtctggcggtgcgtttatcggctgctcgaac
tatccggaatgccgttatacccgcgccttcggcccgcccggcgaagaggatgacagcggc
atccctcccgaaggaaagctgctgggcgaagatggcgaagataagatctacgccttcaag
gggcgttttggcccctatgttcagcgcggcgaagtgaccgaagacaacaagaagccaccg
cgccaatccattccaaaggactggccgccggaggacgtcgacttgccacaggcgctgaaa
ctgctctcgctgccacgcgaaatcggccctcaccccgaagacggtataactgtctgggcc
aatatcggtcgctatggcccctatatcaaacacgcgccgtccacttcggaccgcggcggc
acaaacgccaacctcgaaggcattgacgaggtctttaccgtcggcatgaaccgcgcggta
cagcttttggcagaaaagctcgcgtcgcgcggccagcgtggcggtgcggctaaaaccctg
cgtgatcttggagaacatcccgaagaaggtggccccatcgcgatcatggagggcaaatac
ggaccttacgtcaaatgggaaaaggtaaacgccaccctgcccaaagacagcgatcccgcc
gggttgaccatggaagccgccgtggccctgatcgacgaaaaggccgcgtcaaagggcaaa
aagcgtcgcaaggcagcccccaagaagacagccgccaaaaagactgcgacaaaaaaggcc
gcacctaaaaagaccgcacccaagaaaaaagcccaggcaaaaaaagctgaagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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