KEGG   Rhodothermus marinus SG0.5JP17-172: Rhom172_0947
Entry
Rhom172_0947      CDS       T01606                                 
Name
(GenBank) 60 kDa chaperonin
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
rmg  Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rmg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Rhom172_0947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rmg03019]
    Rhom172_0947
   03110 Chaperones and folding catalysts [BR:rmg03110]
    Rhom172_0947
   03029 Mitochondrial biogenesis [BR:rmg03029]
    Rhom172_0947
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rmg04147]
    Rhom172_0947
Enzymes [BR:rmg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     Rhom172_0947
Messenger RNA biogenesis [BR:rmg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Rhom172_0947
Chaperones and folding catalysts [BR:rmg03110]
 Heat shock proteins
  HSP60 / Chaperonin
   Rhom172_0947
Mitochondrial biogenesis [BR:rmg03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    Rhom172_0947
Exosome [BR:rmg04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Rhom172_0947
  Exosomal proteins of other body fluids (saliva and urine)
   Rhom172_0947
  Exosomal proteins of breast cancer cells
   Rhom172_0947
  Exosomal proteins of colorectal cancer cells
   Rhom172_0947
  Exosomal proteins of bladder cancer cells
   Rhom172_0947
SSDB
Motif
Pfam: Cpn60_TCP1 REF
Other DBs
NCBI-ProteinID: AEN72877
Position
1072254..1073876
AA seq 540 aa
MAAKQITFNSDARMALKRGVDKLADAVKVTLGPKGRNVIIEKKFGAPTVTKDGVTVAKEI
ELEDKLENVGAQMVKEVASKTSDVAGDGTTTATVLAQAILTAGLKSVTAGANPMDLKRGI
DKAVEVVVAELRKMSQEVQDKNRIAQVATISANGDKAIGQLIADAFEKVGKDGVITVEEA
KGTETTLEVVEGMQFDRGYLSPYFVTNPDTMEAVLEEAYILIHDKKISAMKDLLPILEKV
VQTGKPLLIIAEDVEGEALATLVVNKLRGVLKVAAVKAPGFGDRRKAMLEDIAILTGGTV
ISEEKGYRLENATLDYLGQAERIIVDKDNTTIVGGKGDPAQIKARANQIRQQIEETTSDY
DREKLQERLAKLAGGVAVLKIGAATEPEMKEKKARVEDALHATRAAVEEGIVPGGGVAYI
RAIAALDKVEVENEDQKIGVQIVQRALEEPLRQIAENAGWEGSIVVQRVKEGQGDFGFNA
QTEEYGNLLEQGVIDPTKVARTALENAASVAGLLLTTEAVVAEKPEKEKAQAPSPGDMDF
NT seq 1623 nt   +upstreamnt  +downstreamnt
atggctgcgaagcagattacgttcaattcggatgcgcgcatggcgctgaagcggggcgtc
gacaagctggctgacgctgtaaaggtgacgctggggccgaagggccgcaacgtgatcatc
gagaagaagtttggcgccccgaccgtcacgaaggacggcgtgacggtggccaaggaaatc
gagctggaggacaagctggagaacgtcggtgcccagatggtcaaggaggtcgcctcgaag
acgagcgacgtggcgggtgacggtacgacgacggcgaccgtcctggctcaggccatcctg
acggccgggctgaagagcgtcacggccggtgcgaacccgatggacctgaagcggggcatc
gacaaggccgtggaggtggtcgtggccgagctgcgtaagatgagccaggaggtgcaggac
aagaaccgcattgcacaggtggccacgatctcggccaacggcgataaggccatcgggcag
ctcatcgccgacgcgttcgagaaggtcggtaaggacggcgtcatcacggtcgaggaggcc
aagggcaccgagacgacgctcgaggtcgtcgagggtatgcagttcgaccgggggtacctc
tcgccctacttcgtgacgaaccccgacacgatggaggccgtcctggaggaggcctacatc
ctgatccatgacaagaagatctcggcgatgaaggacctgctgccgattctggagaaggtg
gtccagaccggcaagccgctcctgatcatcgccgaggatgtggagggcgaggcgctggcg
accctggtcgtcaacaagctgcgcggcgtgctgaaggtggcggccgtcaaggcgccgggc
ttcggcgatcgccgcaaggccatgctggaggacatcgctatcctgaccggcggtacggtc
atttccgaggagaagggttaccggctggagaacgccacgctggattacctgggccaggcc
gagcggatcatcgtcgacaaagacaacacgacgatcgtcggcggtaagggcgatccggct
cagatcaaggcccgcgccaaccagatccggcagcagatcgaggagaccaccagcgactac
gaccgcgagaagctgcaggagcggttggcgaagctggccggtggcgtggcggtgctgaag
atcggtgcggccaccgagcccgaaatgaaggagaagaaggcccgcgtcgaggacgcgctg
cacgcgacgcgtgccgccgtcgaagaaggcatcgtgccgggtggtggcgtggcctacatc
cgggccattgcggcgctcgacaaggtcgaggtggagaacgaggaccagaagatcggcgtg
cagatcgtccagcgggcgctggaagagccgctccggcagattgccgagaacgcgggttgg
gaaggctcgatcgtcgtccagcgcgtcaaggaaggccagggcgacttcggcttcaacgcc
cagaccgaagagtacggcaacctgctggagcagggcgtgatcgacccgacgaaggtcgcg
cgcacggcgctggagaacgccgcctcggtggccggcctgctgctgacgacggaggctgtc
gtggccgaaaagccggagaaggaaaaggctcaggcgccgagccccggcgacatggacttc
taa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system