KEGG   Rothia mucilaginosa: RMDY18_09990
Entry
RMDY18_09990      CDS       T01144                                 
Name
(GenBank) DNA-directed RNA polymerase, subunit K/omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
rmu  Rothia mucilaginosa
Pathway
rmu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RMDY18_09990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rmu03021]
    RMDY18_09990
   03400 DNA repair and recombination proteins [BR:rmu03400]
    RMDY18_09990
Enzymes [BR:rmu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RMDY18_09990
Transcription machinery [BR:rmu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RMDY18_09990
DNA repair and recombination proteins [BR:rmu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RMDY18_09990
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF6105
Other DBs
NCBI-ProteinID: BAI64831
UniProt: D2NT55
Position
1095560..1096060
AA seq 166 aa
MFGTYIPSSYLEFLVANEIKEHEDYNFVDGVAPEGIVSPSADALIEKAESKYGLVIFGAR
RARQINAYYANLQDNTAAHVGPLVDAESNEKSLSVAMREIIADRVVAEHRPDAKFDEDGY
PIPEDLSAVIDFSAAEFSGAIEEEYIPAGSEEVIAIEEVILDESAE
NT seq 501 nt   +upstreamnt  +downstreamnt
gtgttcggtacgtacattccatcaagctatttggagtttttagtggcaaacgaaatcaag
gaacacgaggactacaacttcgttgacggtgtcgctcccgagggcatcgtgagccccagc
gctgacgcgctgattgagaaggctgagtccaagtacggcctggtgattttcggtgcccgc
cgtgcacgccagattaacgcgtactacgctaacctgcaggacaatactgctgcgcacgtt
ggcccgctggttgacgctgagtcgaacgagaagtccctgtcggtggcaatgcgtgaaatc
attgctgaccgtgttgtggcggagcaccgcccggacgcaaagttcgacgaggacggctac
ccgattcccgaggatctgtccgctgtgattgatttcagcgcggctgagttctccggcgct
atcgaggaggagtacatccccgcaggtagcgaagaggttatcgctatcgaagaggttatc
ctcgacgagtccgctgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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