KEGG   Rattus norvegicus (rat): 116475
Entry
116475            CDS       T01003                                 
Symbol
Ift172
Name
(RefSeq) intraflagellar transport protein 172 homolog
  KO
K19676  intraflagellar transport protein 172
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rno03037]
    116475 (Ift172)
Cilium and associated proteins [BR:rno03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex B2
   116475 (Ift172)
SSDB
Motif
Pfam: WD40 Clathrin Coatomer_WDAD TPR_11
Other DBs
NCBI-GeneID: 116475
NCBI-ProteinID: NP_446244
RGD: 620744
Ensembl: ENSRNOG00000057813
UniProt: Q9JKU3
Position
6:30801841..30841239
AA seq 1749 aa
MQLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADM
KYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQW
PAEYIIVFGLAEGKVRLANTKTNKSSTIYGTDSYVVALTTNCSGKGILSGHADGTIVRYF
FDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDPQE
REFTTAAASPGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSR
LCAGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEV
KILGKERYLVAHTSDTLLLGDLNTNRLSEIPWQGSGGNEKYFFENENVCMIFNAGELTLV
EYGSNDSLGSVRTEFMNPHLISVRINERCQRGMEDNKKLAYLVDIKTIAIVDLIGGYNIG
TISHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYVQWVPGSDVLVA
QNRNSLCVWYNIEAPERVTMSSIRGDVVGLERGGGKTEVMVTEGVTTVAYTLDEGLIEFG
TAIDDGNYTRATAFLETLEMTPETEAMWKTLSKLALEARQLHTAERCFSALGHVAKARFL
HETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHR
WDECIAVAEAKGHPALEKLRRDYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPA
KAARLVLTREELLANTELVEHITTALIKGELYERAGDLFEKIRNPQRALECYCKGNAFMK
AVELARLAFPVEVVRLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAI
YILDLQDRNTASKYYPRVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL
AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVEEPDLAITMFKKHKLYDDMIRLV
GKHHPDLLSDTHLHLGKELETEGRLQEAEYHYLEAQEWKATVNMYRSSGLWEEAYRVAKA
HGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAIDHAADNCSFEFAFELSRLALKHK
TPEIHLRYAMYLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA
EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPGQLEAL
QEEYEREATKKGGRGVEGLVEQARQWEQAGEYSRAVDCYLKVRDSGSSGLMEKCWMKAAE
LSIKFLPPQRSLEVVRVVGPQLIGIGKHSASAELYLNLDLVKEAIDAFIEGEEWNKAKRV
AKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVVAALDLYVEQGQWDKCIETATKQNYK
ILHKYVALYATHLIREGGYAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNNAEAY
HSWADLRDVLFNLCENLVKSSEANSAAHEEFEMMLLIAHYYATRSAAQSIKQLETVAARL
SVSLLRHTQLLPADKAFYEAGTAAKEVGWENMAFIFLNRFLDLTDAIEEGTLDALDHSDF
QDTDIPFEVPLPAKQHVPEAQREEVRDWVLTVSMDQRLEQVLPRDERGVYEASLVAASTG
VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGG
LPSTSFSFQ
NT seq 5250 nt   +upstreamnt  +downstreamnt
atgcagttgaagcacctgaggaccctgctgagccctcaggatggagctgcgaaggtgacc
tgcatggcctggtcccagaacaatgctaaatttgctgtctgcacagtggaccgagtggta
ctgctgtacgatgaacacggggagcggagagacaagttctccaccaaaccagctgacatg
aagtatggcaggaagagctacatggtcaaaggcatggctttctctcctgattccacaaaa
attgccataggacagactgacaacatcatctatgtctacaagataggagaagactggggt
gacaagaaggtcatctgcaacaagttcatccagacgagtgccgtcacttgtctgcagtgg
cctgcggagtatatcattgtctttggactggctgaaggcaaggttcgcttagcaaacaca
aaaactaacaagtcatctactatctatgggacagattcctacgtggtagcgctgacaacc
aactgctctgggaaagggattctctcgggtcacgcggacggcaccatcgttaggtatttc
ttcgatgacgaaggctcgggagagtcacaggggaagttggttaaccatccatgcccaccc
tatgccttggcctgggccaccaacagcattgtggctgctggctgtgatcggaggattgtg
gcctatggaaaggaaggccatgtgctacagactttcgactatagccgtgaccctcaggag
cgggagttcaccacagctgctgcaagtcctggaggccagtctgttgttcttggaagttat
gacagacttcgggtgttcaactggagtcctcgaagaagcatctgggaagaggcaaagccc
aaggagattgccaacttatacacagtcaccgccttggcctggaagcgggatggctctcgg
ctctgtgcgggaacactctgtggtggggtggaacagtttgactgctgcctccgaaggagc
atttacaagaacaagttcgagctgacatatgtgggccctagccaggtgattgtgaagaac
ctgtcttcggggaccagggtggtgctcaagtcacactatggctacgaagtggaagaggtg
aaaatcctgggaaaggaacgttacctggtggctcacacttcagacacgctgctgctggga
gacctcaacacaaaccgcctcagtgagataccctggcagggatcgggtggcaatgagaaa
tatttctttgaaaatgagaatgtctgcatgatcttcaatgctggagagctgaccctggtg
gaatatgggagtaacgactccttgggttctgtgcgcactgaattcatgaaccctcacctc
atcagcgtccgtatcaatgagaggtgccagcgaggaatggaagacaataagaaattggct
tatcttgttgatattaagacgattgctatagtggatctgatcggtggctacaacattggt
actatcagtcacgaaagccgtgtggattggctggaacttaacgaaactgggcacaagctt
ctcttcagagaccggaaacttcgtttgcatctgtacgatattgaaagctgctctaagaca
atgatcctgaacttctgctcctacgtgcagtgggttcccgggagtgatgtgctggtggct
cagaaccggaacagcttatgtgtctggtacaatatcgaggcacctgagagagtcaccatg
tcctctatcaggggtgatgttgtcggtctggagagaggtggtgggaagacggaggtcatg
gtgacagaaggtgtgactactgtggcctacaccctggatgagggcctgattgagtttgga
acagccatcgatgacggcaactacacccgggcaacagccttcttggagaccctggagatg
accccagaaacagaggcaatgtggaaaaccttgagcaaactggccctggaagcaaggcag
cttcacactgctgagaggtgcttctctgctttgggtcacgtggccaaagctcggttcctg
catgagaccaatgagatagcggatcaggtgtccagggaatatggtggagaaggaacggac
ttctatcaggttcgagctcgcctcgccatgctggagaagaactacaaactggccgaaatg
atcttcttggaacagaatgctgttgaagaagccatggacatgtaccaggagctgcaccgc
tgggatgaatgcattgctgtggctgaggccaagggacacccagccctggagaagctacgc
agagattactatcagtggttaatggacacacagcaagaggaacgagcaggtgaactgcag
gagagtcaaggggatgggctggcagccatcagcctctacctcaaagctgggctccctgcc
aaagccgcacggctggtgctgacgcgagaggagctgctggccaacacggagctggtagaa
catatcaccacagccctcatcaagggagagctctatgaaagggcaggtgatctctttgag
aagattcgaaatccacagcgggcccttgagtgctactgtaaaggcaacgcattcatgaaa
gctgttgagctggctcgactggccttcccagtggaggtggtgaggctggaggaggcctgg
ggggaccacttggtacagcaaaagcagctggacgcggccatcaatcactatattgaagcc
aggtgctccattaaagcaattgaggctgccctgggtgcccgccagtggaagaaggcaatt
tatatattagatctgcaggatagaaacactgcatctaaatactatcctcgtgtggcccaa
cactatgcatctctgcaggagtatgagatcgctgaggagctctacaccaaaggagaccgg
accaaagatgctatagacatgtacacccaggctggtcgctgggagcaagcccacaagctg
gccatgaagtgcatgcgaccagaagacgtgtcagtgctctacatcacacaggcccaggaa
atggagaagcagggcaagtaccgagaggccgagaggctgtacgtgacagtggaggagcct
gatcttgccatcaccatgttcaaaaagcacaagttgtatgacgacatgattcgcctggtg
gggaagcaccatccagacctcctcagcgacacacaccttcacctgggcaaggagctggag
acagaaggccgactgcaagaggctgagtaccactacctcgaggcccaggaatggaaggca
actgtgaacatgtaccggtccagcgggctttgggaggaggcctaccgggtggccaaagcc
cacggaggagccaacgcccacaaacacgtggcctatctgtgggcgaagagcctgggagga
gaggctgcggtcagactgctcaacaagctggggcttctagaggctgccattgaccatgct
gctgacaactgctcctttgagtttgcctttgaactctctcggctagccctcaagcacaaa
accccggagattcatctcagatacgccatgtacctggaagatgagggtaaatttgaagag
gctgaagctgaattcatccgggctggtaaacccaaggaggcagtcctcatgtttgtccac
aaccaggattgggaggcagctcagcgtgtggctgaggcccacgatcctgacagtgttgct
gaggtacttgtaggccaggcccgtggggccttggaggagaaggactttcagaaggcagaa
gggttgctgcttcgggcccagagaccaggcctggctctcaattattataaggaggctgga
ctctggagtgatgctctgaggatctgcaaggactatgtgcctggccagctggaggccctg
caggaagagtatgagcgagaagctaccaagaaggggggcagaggcgtggagggacttgta
gaacaggcacggcaatgggaacaggctggagagtatagccgtgcagtggactgctacctc
aaagttcgagactcaggaagcagtggcctgatggagaagtgctggatgaaggcggctgaa
ctgtccatcaagttcctgcctccccagcgaagtctggaagtggttcgggttgtaggtccc
cagctgattggaattggaaagcacagtgcttctgcagaactctatctgaacctggacctt
gtcaaagaagcaattgatgccttcattgagggtgaagagtggaacaaggccaagcgcgtg
gccaaagagctagatccccggtatgaagactatgtggatcagcattataaggagttcctc
aagaaccagggtaaagtggattcgctggtgggtgtggacgtagtagctgccttggacctg
tatgtggagcagggccagtgggataagtgcattgaaacggctaccaaacagaactacaag
attctgcacaagtatgtggctctgtatgcgactcatctgatccgagaaggtggctatgcc
caggccctggccctctacgtgcaacatggagcccctgctaacccccagaatttcaacatc
tacaaaaggatcttcactgacatggttagctctcctgggaccaacaatgctgaggcctac
catagctgggctgaccttcgggatgtcctcttcaacctgtgtgaaaacctggtgaagtcc
agcgaggcaaactcggcagctcatgaggagtttgagatgatgctgctgatcgctcattac
tatgcgacacgatccgcagcgcagagcatcaaacagctggaaaccgtagctgctagactt
tccgtttcgctcttgcgccacacccagttactacctgcggacaaggccttttatgaagca
ggcactgctgccaaggaagttggctgggagaacatggccttcattttcctcaaccgattt
ttggatctgactgatgccatcgaagaagggaccctggatgccctggaccactctgatttt
caggacacagacattccctttgaggtgccactccctgccaagcagcatgtcccggaggcc
cagagagaagaggttcgagactgggtgctcacagtctcgatggaccagaggctggagcag
gttctgccccgagatgagcgtggtgtctacgaggcttccctagtggcagcgagcactgga
gtccgggccctgccctgtctcattacaggttaccccattctgaggaacaaaattgaattt
aagcggcctgggaaggctgctaacaaagacaactggaacaagtttcttatggccatcaag
acctcccacagtccagtgtgccaggatgtgctcaaattcatcagccagtggtgtggtggg
ctccccagcaccagcttttcctttcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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