KEGG   Rattus norvegicus (rat): 307766
Entry
307766            CDS       T01003                                 
Symbol
Smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
  KO
K11654  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    307766 (Smarca5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    307766 (Smarca5)
   03036 Chromosome and associated proteins [BR:rno03036]
    307766 (Smarca5)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    NoRC (nucleolar remodeling complex)
     307766 (Smarca5)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   CHRAC complex
    307766 (Smarca5)
   RSF complex
    307766 (Smarca5)
   WICH complex
    307766 (Smarca5)
   B-WICH complex
    307766 (Smarca5)
   NORC complex
    307766 (Smarca5)
   BRF complex
    307766 (Smarca5)
   NuRF complex (fruit fly)
    307766 (Smarca5)
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE HAND Helicase_C ResIII DEAD HDA2-3 Myb_DNA-binding DBINO AAA_14
Other DBs
NCBI-GeneID: 307766
NCBI-ProteinID: NP_001100889
RGD: 1308832
Ensembl: ENSRNOG00000018149
UniProt: A6IYH1
Position
19:44172465..44208967
AA seq 995 aa
MEEVFDDGSPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSP
LKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKW
GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP
KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVF
KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPD
VFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLS
KMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMH
LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE
RQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG
QTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHG
ATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGE
DYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFF
PPRLFELLEKEILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDEAGPLNDEELEEKEKL
LTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDI
EKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLIC
MLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEE
KEKAEKKKRGPKPSTQKRKMDGAPDGRGRKKKLKL
NT seq 2988 nt   +upstreamnt  +downstreamnt
atggaggaagtatttgatgatggatcacctggaaagcaaaaagaaatccaagaacctgat
cctacatatgaagaaaaaatgcaaactgaccgagcaaatagatttgagtatttattaaag
cagacagagctgttcgcacatttcattcagcctgctgctcagaagactccaacctcaccc
ttgaagatgaaaccagggcgcccacgggtaaaaaaggatgaaaaacagaatttgctttcg
gttggagactaccgacatcgtagaacagagcaagaggaggatgaagagctattaacagaa
agttccaaagcaaccaatgtttgtactcgatttgaagattctccatcatatgtaaaatgg
ggtaaactgagagattatcaggtccgaggattgaattggctcatctctctgtatgagaat
ggcatcaatggtatccttgcagatgagatgggtttgggaaagactctgcaaacaatttct
cttcttgggtacatgaaacactatagaaatattcctggtcctcatatggttttggttccc
aagtctacattgcacaactggatgagtgaattcaagagatgggtgccaacacttaggtct
gtttgcttgataggagataaagagcaaagagctgcatttgtcagggatgttctattacca
ggagagtgggatgtatgtgtcacatcttatgaaatgcttattaaagagaagtctgtgttc
aaaaaatttaactggagatacttagttatagatgaagctcacaggataaaaaatgaaaaa
tctaagttgtcagaaatagtgagagaattcaagactacaaaccgactgttgctgacaggg
acgcctcttcagaacaacctgcacgagctctggtccctgctaaactttttgttaccagat
gtgtttaattcagctgatgactttgattcctggtttgatacaaataattgccttggggat
caaaaactagttgagaggcttcatatggttttgcgtccattccttcttcgtcgaattaaa
gctgatgttgaaaagagtttgcctccaaagaaagaagtaaaaatctatgtgggtcttagc
aaaatgcaaagggaatggtatactcggatattaatgaaagacatagacatactgaactca
gcagggaagatggacaagatgagactgttgaacatcttgatgcagctgaggaagtgctgt
aaccacccttatctctttgacggggctgagcctgggcctccctacaccacagatatgcat
ctggttaccaacagcggcaagatggtggtgttggacaaactgctccctaaattaaaagaa
caaggttcaagagtactaatctttagtcagatgacaagggtattagacattttggaagat
tattgcatgtggagaaattatgagtactgcaggttggatggacagacaccccatgatgag
agacaagactccattaatgcatacaatgaaccaaatagcaccaagtttgtatttatgcta
agcacacgtgctggtggtctgggcatcaaccttgcaactgctgatgtagtaattttatat
gattcagattggaatcctcaagttgatcttcaggctatggaccgagcacatagaattgga
caaacgaagactgttcgagtgttccgctttataactgataacactgtggaagaaagaata
gtagaacgtgccgagatgaagctcagactggattccatcgtaattcaacaagggaggctt
gtagatcagaacctgaacaaaattgggaaagatgaaatgcttcaaatgattcgacatggt
gccacacatgtgtttgcttcaaaagaaagtgaaatcactgatgaggatattgatggtatt
ttggaaagaggtgcaaagaagactgcagaaatgaatgaaaagctctccaagatgggtgaa
agctcacttagaaactttacgatggatacagagtccagtgtttataactttgaaggagaa
gactatagagaaaaacaaaagattgcattcacagagtggattgaaccacctaagagagaa
agaaaagccaactatgctgtagatgcgtacttcagggaagctctgcgtgtcagtgagcct
aaagcacccaaggcgcctcgacctccaaaacaaccaaatgttcaggatttccagttcttt
cctccacgtttatttgaattactggaaaaagaaattctatattacaggaaaactatcggt
tacaaggtacctcggagtcctgatctacccaatgcagcacaggcacagaaggaagagcag
cttaaaatcgacgaagcagggccccttaatgacgaggagttagaggaaaaagagaagctt
ctgactcaggggttcactaattggaataagagagattttaaccagtttatcaaggctaat
gaaaagtggggtcgcgatgatattgagaacatagccagagaagtagaagggaaaactcca
gaagaagtcattgagtactcagctgtgttctgggaaagatgcaatgagctccaggacata
gagaagattatggctcagattgaaaggggagaggcaaggattcaaagaagaataagtatc
aagaaagcactagatacaaagattggacggtacaaagcaccctttcaccaactaagaata
tcgtatggtactaacaaagggaaaaactacacggaagaagaggaccgctttctcatttgt
atgcttcacaagcttggcttcgacaaggaaaatgtttatgatgagttacgacaatgcatc
cgaaactcccctcagttcagatttgattggtttctcaagtccagaactgcgatggagctc
cagaggaggtgtaataccttaattactttgattgaaagggaaaatatggaactagaagaa
aaggagaaggcagagaaaaagaaaagaggaccaaagccttccacacagaaacgtaagatg
gatggtgcccctgatggccgaggaagaaaaaagaagctgaaactatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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