KEGG   Rhodococcus opacus B4: ROP_pROB01-05280
Entry
ROP_pROB01-05280  CDS       T00882                                 
Name
(GenBank) putative exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
rop  Rhodococcus opacus B4
Pathway
rop03030  DNA replication
rop03430  Mismatch repair
rop03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ROP_pROB01-05280
   03430 Mismatch repair
    ROP_pROB01-05280
   03440 Homologous recombination
    ROP_pROB01-05280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rop03032]
    ROP_pROB01-05280
   03400 DNA repair and recombination proteins [BR:rop03400]
    ROP_pROB01-05280
Enzymes [BR:rop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     ROP_pROB01-05280
DNA replication proteins [BR:rop03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     ROP_pROB01-05280
DNA repair and recombination proteins [BR:rop03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     ROP_pROB01-05280
SSDB
Motif
Pfam: RNase_T
Other DBs
NCBI-ProteinID: BAH56027
NITE: ROP_pROB01-05280
UniProt: C1BCH2
Position
pROB01:497428..498150
AA seq 240 aa
MTPNCMSEGAVTMATEEETMTAAENGPREWATRMLAPGHAVILDTETSDLDGSILEVAVI
DAATGAVLLDTLVDPGDVQIHPAAAAVHGISAAQLIGAPDWPTVFSALAAVTADRVVLAY
NASFDQSRIVYDCHRHGLDPLHLADTERWGCVMVKRSQAEGVEKNIRLDGAHRACGDAEA
ARAVLQGIADGPTGTPAPSCGRDAAHRRDAVATTPSGELLADASCPADAAPSVPGSYLHR
NT seq 723 nt   +upstreamnt  +downstreamnt
atgaccccgaactgcatgtcggagggtgccgtcacgatggccaccgaggaggagacgatg
accgcagcagagaacggcccccgggaatgggcgacgcgcatgctcgccccgggccatgcg
gtcatcctcgataccgagaccagcgacctcgacggatcgatcctcgaggtggccgtcatc
gacgcggccaccggcgccgtcctcctcgacaccctcgtcgatcccggcgacgtgcagatt
caccccgcggcggcagccgtacacggcatcagtgccgcccagctcatcggcgctccagac
tggcccaccgtgttctccgccctcgcagcggtcaccgcggaccgggtcgtactcgcctac
aacgcatcatttgatcagagtcgcatcgtgtacgactgccaccgtcacggccttgacccc
ctgcatctggctgacaccgagcggtggggatgcgtcatggtgaagcgctcccaggctgaa
ggcgtcgagaagaacattcgactcgacggtgcgcatcgcgcctgcggtgacgcagaagca
gcccgcgcagtcctccagggcatcgcagacggccctaccggcactcctgcaccctcttgc
ggccgagacgccgctcaccgccgtgacgcggtcgctacgaccccttccggcgaactgctc
gcagacgcgtcctgcccggctgacgcagccccgtcggtgccgggctcttacctgcataga
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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