KEGG   Raoultella ornithinolytica B6: RORB6_21540
Entry
RORB6_21540       CDS       T02625                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ror  Raoultella ornithinolytica B6
Pathway
ror03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ror00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RORB6_21540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ror03019]
    RORB6_21540
   03016 Transfer RNA biogenesis [BR:ror03016]
    RORB6_21540
Enzymes [BR:ror01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RORB6_21540
Messenger RNA biogenesis [BR:ror03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RORB6_21540
Transfer RNA biogenesis [BR:ror03016]
 Prokaryotic type
  tRNA degradation factors
   RORB6_21540
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 S1_2 KH_2 aRib DUF2110 SLS1_KH2 DUF4172
Other DBs
NCBI-ProteinID: AGJ88988
Position
4735060..4737195
AA seq 711 aa
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAEARLSDAYRITDKQERYAQIDVIKAETIATLIAEDETLDANELGEILHAI
EKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTTEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAQHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAAEQTQPAAAPEAPVAEQGE
NT seq 2136 nt   +upstreamnt  +downstreamnt
ttgctaaatccgatcgttcgtaaattccagtacggccaacataccgtaacgctggaaacc
ggcatgatggctcgtcaggccactgctgctgtcatggttagcatggatgacactgcggta
ttcgttaccgttgttggtcagaaaaaagcgaagccaggtcaggacttcttcccgctgact
gttaactatcaagagcgtacttacgcagcaggtaaaatcccgggtggtttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgctaccgttgtttccgtt
aacccgcaggttaacccggatatcgtggcgatgattggtgcttccgcagcgctgtctctg
tcaggtattccgttcaacggtcctatcggttctgctcgcgttggttatatcaacgaccag
tacgttctgaacccgactcaggatgagctgaaagaaagtaagctggacctggtggttgcc
ggtaccgaagcggccgtgctgatggttgaatctgaagctgaactgctgagcgaagaccag
atgctgggtgcggtggtctttggccacgaacagcagcagattgtcattcagaacatcaac
gacctggttaaagaagcgggtaaaccgcgctgggactggcagcctgaagccgtcaacgaa
gcgctgaatgcgcgcgttgctgccctggccgaagcgcgtctgagcgatgcttaccgtatc
actgataaacaagagcgttacgctcagattgacgtgatcaaagcggaaactatcgcgact
ctgattgctgaagacgaaaccctggacgctaacgaactgggtgaaatcctgcacgctatc
gagaaaaatgccgtacgtagccgcgtactggcaggcgagccgcgtatcgatggccgtgaa
aaagatatgattcgtggtctggatgttcgtactggcgtactgccgcgtactcacggttcc
gcactgttcacccgtggcgaaactcaggcgctggtgactgcgaccctgggtaccgcacgt
gatgcgcagaacattgacgaactgatgggcgagcgtactgactccttcctgttccactac
aacttccctccgtactctgtcggtgagactggcatggtgggttcaccgaagcgtcgtgaa
atcggtcacggtcgtctggctaagcgcggcgtactggccgtgatgccgaccaccgaagaa
ttcccgtacaccgttcgcgtggtatctgaaatcaccgaatctaacggttcttcctccatg
gcttccgtgtgcggtgcttctctggcgctgatggatgctggtgtgccggtgaaggctgcc
gttgcgggtatcgcgatgggtctggtgaaagaaggcgacaactacgtcgttctgtctgac
attctgggtgacgaagaccacctcggtgatatggacttcaaagtggcgggttcccgcgac
ggtatctctgcgctgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgcactgaaccaggcgaaaggtgcacgtctgcacatcctgggcgtcatggagcaggcg
attaacgcgccgcgcggcgatatctctgaattcgcaccgcgtatccacaccatcaagatc
agcccggacaagatcaaagacgtgatcggtaaaggcggctctgtgattcgtgcgctgact
gaagagaccggtactaccatcgaaatcgaagatgacggtaccgtgaagatcgcagcaacc
gatggcgataaagcgcagcacgctatccgtcgtatcgaagagatcacggctgagatcgaa
gttggccgtgtttacaatggtaaagtgacccgcatcgttgactttggcgcatttgttgcc
atcggcggcggtaaagaaggtctggtccacatctctcagatcgctgacaagcgcgtagag
aaagtgaccgattacctgcagatgggtcaggaagtgccggttaaagttctggaagttgac
cgtcagggccgcgttcgtctgagcattaaagaagcagctgaacagactcagcctgccgct
gcaccggaagctccggttgctgagcaaggcgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (25)   

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