KEGG   Ralstonia pickettii 12D: Rpic12D_1575
Entry
Rpic12D_1575      CDS       T00925                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rpf  Ralstonia pickettii 12D
Pathway
rpf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rpf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Rpic12D_1575
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpf03400]
    Rpic12D_1575
Enzymes [BR:rpf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Rpic12D_1575
DNA repair and recombination proteins [BR:rpf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Rpic12D_1575
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C MFD_D3 CarD_TRCF_RID ResIII UB2H Glyco_tran_WecG AAA_30 SNF2-rel_dom YAcAr DsrE ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: ACS62859
UniProt: C6BIT6
Position
1:1670280..1673711
AA seq 1143 aa
MSDFSLSALPAVKPGSRFVFSGLQGAADALLLARYLEQHRATVPMLAVVCANAVDAQRLA
EELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQNGACDILLVPASTALQ
RVAPPSFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG
SPLPYRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREFPMDEASRTAFRGRWREVF
EGDPTRSPIYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPGATHLAFVGDIEGAVRRFW
ADTTQRYNFMRHDRERPLLQPSALYLDEEAFFVAAKPHARLVLRAEPGDAPLSLPLPNVA
VNRRAEDPLVNLESFLMRSNCRVMICAESAGRRETLAQMLTASGLHPEGVADFADLMSGD
AKFVLGVAPLYQGFILGDERVALITETELYAQTVRRAGRRKQEQATAVDSMVRDLAELKI
GDPVVHSEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPET
APLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGFAFPLTPEDYATFAESFGF
EETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTT
LLAEQHYQTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVK
FDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATA
PQKRLAIKTFLRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELIPEARVV
VAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQL
RGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGAGEVL
GDKQSGEITEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPQDYCGD
VQERLSLYKRLANCESSETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAAPLGIRKID
TGANAVTLQFIPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPAEFAALTQTIRHAMR
QLA
NT seq 3432 nt   +upstreamnt  +downstreamnt
atgtccgatttttcgctctccgccctgcccgccgtcaaaccgggctcgcgcttcgtcttc
agcggcctgcagggggcggcagacgccctgctgctggcgcgttacctcgagcagcatcgc
gccaccgtgccgatgctggcggtggtctgcgccaatgccgtcgatgcccagcgcctggcg
gaggagctacgctggtttgccccgcaggcacgcgtgaagctgctgccggactgggaaacg
ctgccgtacgacaatttctcgccgcaccaggatctgatctccgaacggctggcgacgctg
catgacctgcagaacggtgcgtgcgacatcctgctcgtaccggcttccacggcgctgcaa
cgcgtggcgccgccatcgttcctggctgcctacacgttcttcttcaagaagggcgaaaag
ctggacgaggccgcgctgaaagcgcaattcaccctggccggctacgagcacgtcagcgcc
gtgatgcgcccgggcgaatattccgtgcgcggcggcctgatcgacttgttcccgatgggc
tcgccgctgccctatcggctggacctgttcggcgacgagatcgagaccatccgttcgttc
gacccggacacgcagcgcagcctctacccggtgaacgaagtccgcctgctgccgggccgc
gagtttccgatggacgaggcgtcgcgcaccgccttccgcggtcgctggcgcgaggtgttc
gaaggtgacccgacgcgctcgcccatctacaaggacatcggcaacggcgtgccgagcgcc
ggcatcgagtattacctgccgctgttctttgaagaaaccgcgacgctgttcgactacctg
ccgggcgccacacaccttgcgttcgtcggcgacatcgaaggcgcggtgcgacgcttctgg
gccgacaccacgcagcgctacaacttcatgcgccacgaccgcgagcggccgttgctgcag
ccgtcggcgctgtatctggacgaagaggcgttcttcgttgccgccaagccgcacgcgcgt
ctggtgttgcgcgcagagcccggcgatgcaccgctttcgctgccgttgccgaacgttgcc
gtcaaccgccgcgcagaagacccgctggtcaatctagaatccttcctgatgcgcagcaat
tgccgcgtgatgatctgcgccgaatccgcaggccgccgcgagacgcttgcgcaaatgctg
accgccagcggcctgcaccccgaaggcgtcgcggacttcgccgacctgatgagcggcgat
gccaagttcgtgcttggcgtggctccgctttaccagggtttcatcctcggcgacgaacgc
gtcgcgctcatcacagagactgagctgtacgcgcagaccgtgcgtcgcgcaggtcgccgc
aagcaggaacaggccaccgccgtcgattcgatggtgcgcgatctggccgagttgaagatc
ggcgacccggtggtgcacagcgaacacggcatcggccgctaccagggcctggtgtccatc
gacatgggcaatggcgaggaagagttcctgcacctcgactacgacaagggcagcaagctc
tacgtgccggtgcatcagttgcacgtgatctcgcgctactcaggcgccgatccggaaacc
gcgccgctgcattcgctcggctccggccaatgggaaaaggccaagcgcaaggcggcgcag
cagattcgcgatacggccgccgagcttctgaacctgtacgcgcggcgcgcattgcgccag
ggcttcgcgttcccgctcacgcccgaggattacgccacgtttgccgagagcttcggcttt
gaggaaactcccgatcaggccgccgccatcgcggcggtgatcgccgacatgacgtcgggc
aagccgatggatcgcctcgtctgcggcgacgtcggtttcggcaagacggaagtcgcgctg
cgtgccgcatttgttgcggtgatgggcggcaagcaggtggccatcctggccccgaccacg
ctgctggccgaacagcactaccagacgctggtcgaccgctttgccgactggccggtgcgc
attgccgagatctcgcgtttcaagaacaaaaaagaaatcgacgccgcgatcgaagccatc
aatgccggcacgatcgacatcgtgatcggcacgcacaagctgctctcgccggacgtgaag
ttcgaccgcctggggctcgtcatcatcgacgaggaacaccgctttggggtgcgccagaaa
gaagcgctcaagacgctgcgcgccgaggtggacgttcttacgctcaccgccacgccgatc
ccacgcacgctgggcatggcgctggaaggcctgcgcgatttctcggtgatcgccacggcg
ccgcaaaagcggctggccatcaagacgttcctgcgccgcgaggaagacggcgtgctgcgc
gaggccatcctgcgtgagttgaaacgcggcgggcaggtctacttcctgcacaacgaggtc
gagaccatcgagaacaagcgcgccaagctcgaagagctgattccggaagcgcgcgtggtg
gtcgcccacggccagatgcacgagcgcgagctggagcgcgtgatgcgcgatttcgtggcg
cagcgcgccaacatcctgctgtgtacgacgatcatcgagaccggtatcgacgtgccgacc
gccaacacgatcctgatccaccgcgccgacaaattcggcctggcgcagttgcaccagttg
cgcggtcgcgtcgggcgctcgcaccaccaggcgtatgcgtacctgctggtgcacgacgtc
gacggcctcaccaagcaggcgcagcgccgccttgaagccattcagcagatggaagaactc
ggtgcgggcttctacctggcgatgcacgatctggaaatacgcggcgccggcgaggtgctg
ggcgataagcaatcgggcgagattacggagatcggcttccagctctacaccgacatgctc
aaccaggcggtgaagtcgctcaaggccggcaaggaacccgacctgatggcgccgctcgcg
gccacgaccgagatcaacctcggcacgccggccctgctgccgcaagactattgcggcgac
gtgcaggaacgcctgtcgctgtacaagcgtctggccaactgcgaaagcagcgagacgatc
gacaatatccaggaggagctgatcgaccgtttcggcaagctgccgccgcaggcgcaatcg
ctcatcgaaacgcaccggctgcgcattgccgccgcgccgctgggtatccgcaagatcgac
accggcgcgaacgccgtcacgctgcagttcatcccgaatccgcccgttgacgccatcaag
atcatcgacctcgtgcagaagaaccggcagatcaagctggcggggcaggatcgcctgcgc
atcgagaacattccggccgaattcgccgcgctgacgcagaccatccgtcatgccatgcgg
caattggcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (24)   

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