KEGG   Rickettsia prowazekii Rp22: rpr22_CDS134
Entry
rpr22_CDS134      CDS       T01977                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rpq  Rickettsia prowazekii Rp22
Pathway
rpq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rpq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    rpr22_CDS134 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpq03021]
    rpr22_CDS134 (rpoC)
   03400 DNA repair and recombination proteins [BR:rpq03400]
    rpr22_CDS134 (rpoC)
Enzymes [BR:rpq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     rpr22_CDS134 (rpoC)
Transcription machinery [BR:rpq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     rpr22_CDS134 (rpoC)
DNA repair and recombination proteins [BR:rpq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      rpr22_CDS134 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl_2 Peptidase_M23 RnfC_N
Other DBs
NCBI-ProteinID: ADE29651
UniProt: D5AW62
Position
164912..169030
AA seq 1372 aa
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYDELHITSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTIAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRDQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDYPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEIIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINESKLEQIESAGLDRIMIKSVLTCESSTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDSKGEV
ITLSNGLEARYYLPVGAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDGTMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLVGEKIDRHEFDEINAKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgagcgtagttaatttttatggacaattaagtaatactcaacaatttgaccagataagg
attaatatagccagtcctgatcaggtacgttcttggtcttttggtgaagtaacaaaacct
gaaacgattaattatcgcacttttaaacctgagaaagacggtttattttgtgcaagaatt
tttggtccagtcaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggcattacatgtgagaaatgtggtgttgaagttacagtttctagagtaagacgtgaacga
atgggacatattgagcttgcggctcccgttgctcatatttggtttttaaagtcacttcct
tcgagaattagtacgcttcttgatatgacaatgcgagatgtggaaaagattctttatttt
gaaaattatgtagtagttgatccagggttatcaattttacaaaaaggagaacttttgaca
gaagaagaattacaaaaagcaaaagataagtatggtgaagatgcatttactgcttctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatacgatgaattacacattacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtcgaggattttttagagtcagaaaataagcctgaatggatgattatggat
gttttacctgtgatccctcctgaaattagaccgcttgttatgcttgatggtggaagattt
gctacttcagacttaaatgaactttatagaagggtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgacataatagtcagaaatgaaaaaagaatgttacaa
gaagctgtggatgcgttatttgacaatggtcgtcgcggtagagcagcaaaaaatgctaat
aagcgcccatttaagtcattaagtgatatgcttaaaggtaagcaaggtcgttttcgtcag
aatttactcggtaagagggttgattattcaggacgttcagtgatcgtagtagggcctgag
cttaaacttcatcaatgcggtttacctaaaaaaatggctctagaactatttaagccgttt
atttattctaagcttgagttgtatggtattgctacaactattaaggctgctaaaagaatg
gtggaagcggaaaagcctgaagtttgggatgtacttgaagaggtaattagagagcatccg
gttttactgaatagagctccaactttacataggcttggtattcaagcatttgaacctcta
ttaatcgaaggtaaagcaatacagcttcatccgcttgtttgtgctgcgtttaatgcggat
tttgatggtgatcagatggcggtacatattccattatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagtcctgcaaatggacgtcctattatt
gtaccagataaagatatagtacttggtttatattatcttactattgcatttgataatgaa
gtaggcgaagggatgatgttctcagatttagctgaaatggaacacgcgttatataataaa
tttatcactattcatacaaagatcaaatatcgcagagatcagttaaatgctgaaggtaaa
atggtacctgttatcattgatactacatatggtaggttaatggtcggtgagttattacct
tctaatcctaatatagagtttaagtttattaataaacagctaactaaaaaagatatatca
ttagttatagatttagtttatcgtcactgtggtcaaaaagcgacagttatttttgctgat
cagttaatgaaattaggctttaaatatgcttgctcttcaggtatttcttttggaatggat
gatatggtagtgccagaatctaagagtactcatatcaatgaaacacaacttgagataaaa
gaatttgaacaacaatattcaaatggtttaattacttatggagagaaatataataaagta
gttgatgcttggtcaagatgtacagatagagtagcaaacgatatgatgaaagagattgct
acgccaccagttaatgattatccaaatcatcagaaaataaatgctatatatatgatggct
atttctggagcaaggggttctttccagcagattaagcagctaggtggtatgcgaggttta
atgacgaaatcaaacggtcaaattatacaaacgcctattatctctaactttaaggaaggc
ttaactgaatttgagtgttttaattctgctaatggaatgcgtaaagggcaaatagatact
gctttaaaaacagcaagttcaggttatttaacgaggaaattagtcgatgttgcacaagat
tgtattattactgaaaaagattgtggtactgataaaggaattgaagtgaagagcgttatt
gaaggcggagaaattatagtgcctttagctgaaaagattttaggccgtactgctgctatc
gatatatttcatcctgttactaatgatctcattctcaataaaggtgagcttattaatgaa
tcaaaactggaacaaattgagtcagctggacttgacagaattatgattaaatctgtatta
acctgtgaaagtagtaccggtatatgtagcatatgttatggtagggatcttgctactggt
acattagtatcagagggtgaggcaataggtgttatcgcggcccaatctattggggaacct
ggtacacagcttacaatgagaacctttcatataggaggagctgcaacaaaaggtgctgaa
gtttcttccgtagaagcatcctatgacgcaaaagtaaaaattataagtcgtaacgttgtt
attaattccgaagaacgaaaaattgttatgagtcgtaattgtgaattattattgcttgat
aataacggtaatgaaaaagctcgtcataaaattccatatggtgctagattacttgttgat
gacggtgatatggtgattaaaacacaaaaactagcagaatgggatccttatactatacca
attataacagagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgatgtaactgatgaagctactgggatacctagtaaagttattattgaatcaaagcaa
tattcacgtggtgcagaattacgtccgcgtatacagcttttagattctaaaggtgaagtt
ataaccttatcaaatggtttagaagctagatattacttaccggttggagcagtgttaagt
gtagaagatggaatacaaatatcggtaggtgatatcattgcacgtatacctaaagaatca
accactactaaagatattaccggtggtttaccaagagttgctgaacttgtagaagcaaga
cgtcctaaagatcatgcagtgatcgctgaggttgatggtagagtagaattcggtaaagac
tataaatctaagagacgtattattatacatccaattgatggaacaatgtctattgaatat
atggtacctaaaggcaagcatgttgtagtgaacgaaggagactttgttaaaaaaggtgat
ttattaattgatggtaatcctgtactgcaagatattttaaaagtaatgggtgtagaagtg
cttgcaaattatattgttaaggaggttcaagctgtttatcgcctacaaggtgtaaaaatt
gatgataaacacatagaagttattatccgtcagatgttacaaaaagtagaagttacagat
tcaggtggcactacattactagtaggtgaaaaaatagataggcatgaatttgatgaaata
aatgcaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctacaaactagatcatttatttctgctgcatcattccaagagact
actagagttttaactgaagcagcgattgcaggtaaagtagataagttacgaggactaaaa
gaaaacgtgatagttgggcgattagtacctgctggcactggttactttatggataaaatg
cgtaaagcagctgtaaagcttgatgaagagaatgtataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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