KEGG   Rhodococcus pyridinivorans SB3094: Y013_09010
Entry
Y013_09010        CDS       T02974                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rpy  Rhodococcus pyridinivorans SB3094
Pathway
rpy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rpy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Y013_09010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpy03021]
    Y013_09010
   03400 DNA repair and recombination proteins [BR:rpy03400]
    Y013_09010
Enzymes [BR:rpy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Y013_09010
Transcription machinery [BR:rpy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Y013_09010
DNA repair and recombination proteins [BR:rpy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Y013_09010
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AHD20796
UniProt: V9XBI7
Position
complement(1952791..1956762)
AA seq 1323 aa
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDELRHNELSTLEAEMEVEKKSVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLKPKDLIVDEMI
YRELQDRYGEYFTGAMGAEAIQKLIENFDIDAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVINEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLVEDAPGAYT
AATADEPEQGVYSSPAEAQMAVDRGVLSVQAPIKVRLTQLRPPRDVENELFPEGWKFGEP
WTTQTTLGRVLFNELLPTNYAFVNDIMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTISMADVLVPPEKKDILERYETQADAIQRQYDRGKLSEDERRDSLVKLWQEA
TEEVGQVMEAHYPDDNPIPTIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTPRGIEMTI
AELARDATGQPTGELVRDAHIETSTYARTLATDAVDANGNVVVERGSDLGDPAIEALLEA
GIQKVKVRSVLTCDTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGEDITGGLPRVQELFEARVPKGKAPIADVSGRIRLEDDDRFYKITIIPDDGGEEV
VYDKLSKRQRLHVIRKADGTEGVLADGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLV
HEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERSEFEAANRRVVQ
EGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG
KLIPAGTGINKYRNIEVQPTEEARAAAYAIPAYDDQYYSPDGFGQNTGAAVPLDDYGYSN
DYR
NT seq 3972 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaggacatc
cgtaactggtcgtacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtccgccgtgagcgtatgggccacatcgagctcgccgctccg
gtgacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtcatcacgtcggtcgat
gacgagctgcgccacaacgagctctccactctcgaagccgagatggaggtcgagaagaag
tcggtcgccgaccagcgcgacgccgacctcgaggcccgtgcacagaagctcgaagccgac
ctcgccgaactcgaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctccgcgaccgtgcgcagcgcgagctcgaccgcctcgac
gagatctggacgaccttcacgaagctgaagccgaaggacctgatcgtcgacgagatgatc
taccgcgagctccaggaccgctacggcgagtacttcaccggtgccatgggtgccgaggcg
atccagaagctcatcgagaacttcgacatcgatgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctccgtgctctcaagcgcctgaaggtcgtggcg
gcgttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcc
ctgttcgacaacggccgtcgtggccggccggtcaccggtcccggtaaccggccgctcaag
tcgttgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcgcatggtcgagcgtcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatcaacgagcacccggttctgctgaaccgt
gctcccacgctgcaccgcctcggtatccaggcgttcgagccgcagctcgtcgagggcaag
gccattcagctgcaccccctcgtgtgtgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcatctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgcccgctcgccatgccgcgtctggac
atggtgacgggtctgttccacctgacccgtctggtcgaggacgcccccggcgcctacacg
gccgcgaccgccgacgagcccgagcagggcgtctactcgtcgccggccgaggcccagatg
gccgtcgaccgtggcgtgctgtcggtccaggctccgatcaaggtgcgcctgacccagctg
cgtccgccgcgcgacgtcgagaacgagctgttcccggagggttggaagttcggtgagccg
tggaccacgcagaccaccctcggtcgcgtgctgttcaacgagctgctgccgacgaactac
gcgttcgtcaacgacatcatgccgaagaagcgccaggccgcgatcatcaacgacctggcc
gagcggtacccgatgatcgttgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccatctcgatggcggacgtgctcgttccgccggag
aagaaggacatcctcgagcggtacgagacccaggccgacgccatccagcggcagtacgac
cgaggcaagctctcggaggacgagcgtcgcgactcgctcgtcaagctgtggcaggaagcg
accgaagaggtcggtcaggtcatggaggcgcactacccggacgacaacccgatccccacg
atcgtcaagtccggtgctgcgggcaacatgacccagatccgttcgctggcgggcatgaag
ggtctggtgacgaacccgaagggcgagttcatcccgcgcccgatcaagtcctccttccgt
gagggcctgaccgtcgccgagtacttcatcaacacgcacggcgcgcgtaagggtctggcc
gacaccgctctccgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtctcg
caggacgtcatcgtccgcgaggtcgactgcggcacgccgcgcggcatcgagatgaccatc
gccgagctcgcacgcgacgcgaccggtcagccgaccggtgagctcgtgcgcgacgctcac
atcgagaccagcacctacgctcgcacgctggcgacggacgcggtcgacgcgaacggcaac
gtcgtcgtcgagcgtggttccgacctcggcgacccggcgatcgaggcgctgctcgaggcc
ggtatccagaaggtcaaggtccgctcggtcctgacctgcgacaccggcaccggcgtgtgc
gcgacctgctacggacgttcgatggcgacgggcaagctcgtcgacatcggcgaggccgtc
ggtatcgtcgccgcccagtcgatcggtgagcccggtacgcagctgacgatgcgtaccttc
caccagggtggcgtcggtgaggacatcaccggtggtctgccccgcgtccaggagctgttc
gaggctcgcgtccccaagggcaaggccccgatcgccgacgtctccggtcgcatccgtctc
gaggacgacgatcgtttctacaagatcacgatcatccccgacgacggtggcgaggaggtc
gtgtacgacaagctgtccaagcgtcagcgtctgcacgtcatccgcaaggccgacggcacc
gagggcgtgctcgcggacggcgatcacgtggaggtcggtcagcagctcctcgagggctct
gccgatccgcacgaggtgctgcgcgtgatgggcccgcgtcaggttcaggtccacctggtc
cacgaggtccaggaggtctaccggagccagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtgcgtcagatgctgcgtcgcgtgacgatcatcgactcgggctcgacggagttc
ctgcccggttcgctcgtcgagcgcagcgagttcgaggctgcgaaccgtcgtgtggttcag
gagggcggcgagccggctgccggccgtccggtcctcatgggcatcacgaaggcgtcgctg
gccaccgactcgtggctgtcggcggcgtccttccaggagaccactcgcgtgctcaccgac
gcggcgatcaactgccgctcggacaagctgatcggtctcaaggagaacgtgatcatcggt
aagctgatccccgccggtaccggtatcaacaagtaccggaacatcgaggtccagccgacc
gaggaggcccgtgcggccgcgtacgccatcccggcgtacgacgaccagtactactcgccg
gacggcttcggccagaacaccggcgctgcagtgccgctggatgactacggttactccaac
gactaccggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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