KEGG   Rubrobacter radiotolerans: RradSPS_1425
Entry
RradSPS_1425      CDS       T03080                                 
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rrd  Rubrobacter radiotolerans
Pathway
rrd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rrd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RradSPS_1425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rrd03019]
    RradSPS_1425
Messenger RNA biogenesis [BR:rrd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RradSPS_1425
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: AHY46708
UniProt: A0A023X2Z4
Position
1497754..1499415
AA seq 553 aa
MSDKNALQVVPLGGLGEIGKNMTAVRGSGGIVLVDAGMSFPDEEMPGIDLVLPDFTYLRE
NAGELRGILLTHGHEDHVGAIPYVLREFNIPVYGTRITLGLVRSKLQEFGIKNADLREVV
DGQRVRVGGINAEFIHVNHSIPGATAIALRTNAGLIVFSGDYKIDFTPIEGPPMDLGRFA
ELGKEGVLAYFGDSTNSERPGYVPSERTVAATLGKVFEEAQGRIIVASFASHLHRVAQVV
ETAKKHNRLVGLTGRSMVRNVGIARELGYLDIPDQMLVDQKDFSRIPDKDIVILTTGSQG
EPLAGLSRIAAGTHRSVEVGEGDTVVIAAHPIPGNEPGVSRTINGLMQRGAEVLYSPLQR
VHVSGHAAQEEQKLVLALLKPRYLVPVHGEYRMLKHHAQTAMSMGIPESNIFILENGSRL
EFRDGNAKRLKSVSAGMFLVDGGGLADTSESVMRDRQQLSGDGMFIVVAKINSKTGELLG
PPDVMSRGFMDQQTQNGTVEGSVEVVTKTLERTAKRNITDWSQLKTEIRRDLSTYLSQKT
RKRPMILPLIVEV
NT seq 1662 nt   +upstreamnt  +downstreamnt
ttgtcagacaaaaacgccttgcaggtcgtacccctggggggactcggggagatcggcaag
aacatgaccgccgtgcgcgggtccggggggatagtccttgtagatgcggggatgtcgttc
ccggatgaggagatgccgggcatcgacctcgtcctgccggacttcacgtaccttcgggag
aacgcgggcgagcttcgcggcatcctgctcacgcacggccacgaggaccacgtaggggcc
atcccgtacgttctccgggagttcaatatcccggtctacgggacgaggatcacgctcggc
ctcgtgaggagcaagctgcaggagttcgggataaagaacgccgacctccgggaggtcgtc
gacggacagagggtgcgcgtcggcgggataaacgcggagttcatacacgtcaaccactcc
atacccggagccacggcgatcgccctgcgcacgaacgcgggcctcatcgtcttctccggc
gactacaaaatagactttaccccgatcgaaggccccccgatggacctcgggcgcttcgcg
gagctcggcaaggagggcgtcctcgcctactttggagactcgacgaacagcgagcgtccg
ggctacgtcccctcggagcggaccgtcgctgcgacgctcggcaaggtcttcgaggaggcg
cagggccggatcatcgtcgcctcgttcgcctcgcacctgcaccgggtcgctcaggtcgtc
gagacagcgaagaagcacaaccgccttgtcggcctgacgggccgctcgatggtccggaac
gttggcatcgcgcgcgagctcggctacctggatatcccggatcagatgctcgtggaccag
aaggacttctcgcgtatcccggacaaggacatcgtgatcctgacgacgggctctcagggc
gagccgctcgccggtctctcgcgtatcgccgcgggtacgcaccgttcggtcgaggttggg
gaaggcgacacggtcgttatcgccgctcacccgataccgggcaacgagccgggggtctcg
cggaccatcaacggcctcatgcagcgcggggcggaggtcctctacagcccgctgcagcgg
gtccacgtctcggggcacgccgcgcaggaggagcagaagctcgtgctcgcgcttctcaag
ccgcgctacctcgtcccggtgcacggggagtaccggatgctcaagcaccacgcccagacg
gcgatgagcatgggcatcccggagagcaacatctttatccttgagaacggaagccgcctc
gagttccgcgacggaaacgccaagcgcctgaagagcgtttcggccggtatgttcctcgtc
gacggcggcggcctcgccgacacttcggagtcggtgatgcgcgaccggcagcagctctcc
ggcgacggtatgttcatcgtcgtggcgaagatcaactcaaagaccggcgaactcctcgga
ccgccggacgtgatgagccgcggctttatggaccagcagacccagaacggcaccgtcgaa
ggctcggtcgaggtcgtaacaaagacgctcgaacgcaccgccaagcgcaacatcaccgac
tggagccagctgaagaccgagatccggcgcgacctctcgacctatctctcgcagaagacg
cgcaagcggcccatgatacttcctctaatagtagaggtctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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