KEGG   Rickettsia rickettsii R: RRR_03525
Entry
RRR_03525         CDS       T03663                                 
Name
(GenBank) polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
rrr  Rickettsia rickettsii R
Pathway
rrr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rrr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RRR_03525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rrr03019]
    RRR_03525
   03016 Transfer RNA biogenesis [BR:rrr03016]
    RRR_03525
Enzymes [BR:rrr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RRR_03525
Messenger RNA biogenesis [BR:rrr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RRR_03525
Transfer RNA biogenesis [BR:rrr03016]
 Prokaryotic type
  tRNA degradation factors
   RRR_03525
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 Transposon_TraM CSD
Other DBs
NCBI-ProteinID: AJG33098
Position
complement(647214..649460)
AA seq 748 aa
MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT
INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY
DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA
GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPAS
LKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESALKA
IESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTS
LDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKV
QFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVLS
DILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNK
VISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVYA
SDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGERI
ETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKDKFSNNTKPKTSVNNTKDNSEPEQR
HDSSKKRAWNEDNNAEIAEVITERKYFN
NT seq 2247 nt   +upstreamnt  +downstreamnt
atgtttaacgaaataactaagagtgttacatggaacgggcaagttcttgagcttagtaca
ggtaaaatagcaaggcaagctgacggggcagttacggtaaaaatgggtaattccgtttta
ttatgtacggcagtagtagctaacaaagcaaaagagggcataggttttcttcctttaaca
attaattatagagaaatggcatatgctgccggtaagataccagggggattttttaaacat
gagggaaaaccatcagatagagaagttttagtatctcgtttaatagatagaccgattaga
ccattatttcatccggcttttgtgaatgaaacgcatgtcacttgcagtgttctttcatat
gatcctgaaactccggtagatatacttgcaattatcggtgcatcggctgcacttagccta
tcccctgctccttatctagaaatagttgcggcaagtaaagtaggtttaatcaatggtgaa
tttgttttaaatccgacacttgcattattaaaaacaagtcagcttgatttagtagttgca
ggaacatcagattcagtaatgatggttgaatcagaagctcatttactttctgaagaacaa
atgttagaagctgtaaaatttggatttgaaagctttcagccggtaataaagataattaaa
gaactagcagaagaagctaaaaaaccaaaacttgaaatgcaagctttatatcctgcttca
ttaaagaaagaaattgagaagttatttgtaaaagaaattgaacaagcttttgcaatgaaa
tctaaacaagaacgtagcactaatttagatttaataactgaaaaagtttttacacatttt
gtaagcgacatagaaaataaaaaatatagtcattatcaaatcgaatcagctttaaaagct
attgaatcaggtatattacgtaacgagattttagaaaaaaatagacgtatcgatggaaga
agtaccacggatataagacaaattgcttgtgaaataggtttactaccttccgcacatggt
tcagctttatttactagaggtgaaacgcaaagcttagttagtactacattcggtactagt
ttagatgagcagatagttgacagtttagagggtgagtataaagagcgttttatgctcaat
tatatctttccgccctactctgtaaatgaagcaatgccaatgaaagcacctagtcgtcgt
gaagtcggacacggtaaactcgcatggcgtgctattaatccaatattacctaataaagta
caatttccttattctattagagtagttgccgaaactacggaatctaacggttcttcttca
atggcaactgtttgcggtagttctcttgctttaatgtatgccggcgtaccgataaaagca
ccggttgcgggtattgctatgggacttgttaaggaaggtaaaaattttgccgtattatcg
gatattctcggcgatgaagattatttcggtgatatggactttaaggttgcaggaactggc
gaagggattactgcattacaaatggatatcaaaatatccggagtagattttaaaataatg
aaagtagctttagagcaagcacgactcggtcgtttacatatactggagcaaatgaataaa
gttatcagtaaaccaaataacgaactaagtaaaaatgctccttctactactactataaaa
atagataaggataaaattagagatattataggaccgggaggtaaagtaataaaggaaatt
tgtgaaactagcggtgctaaaatagatataagcgatgacggtacggtgtctgtttatgct
tcagatagagataagctaaaagttgccttagataaaattaaagctattgtcgttgaacct
gaaatcggtgaaatatttaacggtacggtagtgaaagtcttagattccggtgcttttatt
aattatgtaggtaataaagacggctttgttcatattagtgaagtatcaggagaaagaata
gaaacggttagcagtgttttaaaacaaggcgatatagtaaaagttaagctaataggcttt
gataataaaggcaaagcaaaattaactattaaaaatgccgataaagataaattttcaaat
aatacaaagccaaaaactagtgttaataatactaaggacaattcagaacctgagcagcga
catgattctagtaaaaaacgcgcttggaatgaagataataatgctgaaattgctgaagta
attacagaacgtaagtattttaattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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