KEGG   Rhodococcus ruber: CS378_22445
Entry
CS378_22445       CDS       T05142                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rrz  Rhodococcus ruber
Pathway
rrz03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rrz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CS378_22445 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrz03400]
    CS378_22445 (mfd)
Enzymes [BR:rrz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CS378_22445 (mfd)
DNA repair and recombination proteins [BR:rrz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CS378_22445 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII MEDS LSDAT_prok AAA_22 DUF3638 IstB_IS21 UB2H RecG_dom3_C
Other DBs
NCBI-ProteinID: ATQ31224
UniProt: A0A098BSY4
Position
4903068..4906700
AA seq 1210 aa
MSDVSVTPLSGLARIALADAQLERVAALAGTAAQALVAPPAARPFVAAALAAKTPLLVVT
ATGREADDLTAELREMLGDVVAQFPSWETLPHERLSPSADTVGRRLQVLRRLAHPEDRDY
GPELRVIVATVRSLVQPMAPGLGDIEPVTLRVGAEHDFDELIERLVELAYTRADMVGKRG
EFAVRGGILDVFPPTADHPVRVEFWGDEVTELRPFSVADQRSIPELEVSTLIAPPCRELL
LTEQVKERAARLAQDNPADAALVEMLDKMASGIPVEGMEALLPVLQTGELQLLTDVVPDG
THVLLCDPEKVRTRAADLMRTGQEFLEASWTAASLGGAAPLDTANMKGVDLAASAYRPLT
GVRETAEAAGRPWWTLSPLASGADTEVVLDVQSAPEVRGSEELLTMLFANLRAHVTTGGR
AAIVVAGAGTGQRVLERLQENDVPAARLDPGAEPVRGTVGVLCGALHDGLVLPGDGADVP
GLVLVTESDLTGNRVTAAEGRRTPVKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTV
GGARREYLVIEYAPGKRGQPGDRLFVPMESLDQLSRYVGGEMPALSKLGGSDWANTKRKA
RKAVREIAGELVQLYAARQAAPGHAFAPDTPWQKEMEDAFAFTETQDQLTVISEVKADME
KAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERMASFP
VTVKGLSRFTDSAEAKETIAALADGEVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYADKQ
VAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDTLEKTVQGF
WERQYDVLVCTTIVETGLDISNANTLVVERADSLGLSQLHQLRGRVGRSRERGYAYFLYP
PEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAFRAAADGRPVATEEAAKEVRVDLPVDAHIPPDYVTSDRLRLEAYRKLAAAHD
DDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCREYDLEEVAVSGTQLKISPMHLPDS
KQMRLKRLYPAAQYRATSGIVQLPLPRTGGVGSERVRDVELLQYIADFLLALDGKAQGSV
DVRVPTAASV
NT seq 3633 nt   +upstreamnt  +downstreamnt
gtgtccgacgtgtccgtcacccccctgtccggattggcgcggatcgcgctggccgacgcg
cagctcgagcgtgtggccgccctcgccgggaccgccgcacaggccctggtggccccgccc
gcggcccggccgttcgtcgctgccgcgctcgccgcgaagacgccgctgctcgtggtgacc
gcgaccggccgtgaggcggacgatctcacggcggagctgcgcgaaatgctcggcgacgtc
gtcgcgcagttcccctcgtgggagacgctgccgcacgagcggctctcgcccagcgccgac
accgtcggccgccggttacaggtgctgcgccggctcgcgcaccccgaggaccgcgactac
ggacccgagttgcgggtgatcgtcgcgaccgtgcgctcgctggtgcagccgatggccccc
ggtctgggcgacatcgagcccgtcaccctgcgtgtcggcgcggagcacgacttcgacgag
ctgatcgagcggctcgtcgagctggcctacacccgtgccgacatggtcggcaagcgcggc
gagttcgcggtgcgcggcggcatcctcgacgtcttcccgccgaccgcggaccacccggtg
cgagtcgagttctggggtgacgaggtcaccgagctgcgcccgttctccgtcgccgaccag
cggtccatccccgaactcgaggtgagcaccctcatcgccccgccctgccgggaactgctg
ctgaccgagcaggtcaaggaacgcgcggcgcgcctcgcccaggacaacccggccgacgcg
gccctggtggagatgctcgacaagatggcctccggcatcccggtcgagggcatggaggcg
ctgctgccggtgctgcagaccggcgagctgcagttgctgaccgacgtcgtgccggacggt
acgcacgtgctgctgtgcgatccggagaaggtccggacccgcgcggcggacctgatgcgt
accggccaggagttcctcgaggcgtcgtggaccgcggcctcgctcggcggggccgcgccg
ctggacaccgcgaacatgaagggtgtggatctggccgcctccgcgtaccggccgctgacc
ggggtgcgggagacggcggaagccgcgggccggccgtggtggacgctgagcccgctggcg
tcgggcgccgacaccgaggtcgtgctcgacgtgcagtcggcgccggaggtgcgcgggtcc
gaggaactgctgacgatgctcttcgcgaacctgcgcgcgcacgtaaccaccggcgggcgg
gcggcgatcgtcgttgcaggtgccggcaccgggcagcgggtgctcgagcggcttcaggag
aacgacgtacccgcagcgcggctcgatccgggggccgaaccggttcgcggcacggtcggg
gtgctgtgcggcgcgctgcacgacggcctggtgctgccgggcgacggcgcggacgtgccc
ggactggtgctcgtcaccgagtccgatctcacgggcaaccgggtgaccgccgccgagggc
cggcgcacgccggtcaagcgccgcaaccaggtggatccgctggcactcaccgccggagac
atggtggtccacgatcagcacggcatcggccggttcgtggagatggtggagcggaccgtg
ggcggcgcccgccgcgagtacctggtcatcgagtacgcgccgggcaaacgcgggcagccg
ggtgaccggctgttcgtgccgatggagtccctcgaccagctctcccgctacgtcggcggc
gagatgcccgccttgagcaagctcggcggctccgactgggccaacacgaaacgcaaggcg
cgcaaggccgtccgcgagatcgcgggggagctggtgcagctgtacgcggcccgccaggcc
gccccggggcacgcgttcgcgccggacaccccgtggcagaaggagatggaggacgcgttc
gcgttcaccgagacccaggatcagctcaccgtcatctccgaggtcaaggccgacatggag
aaggcggtcccgatggatcgcgtcgtcatcggcgacgtcggctacggcaagaccgagatc
gcggtgcgtgccgcgttcaaggccgtgcaggacggcaaacaggtcgcggtgctggtgccc
accacgctgctggcgcagcagcatctgcagaccttcacggagcggatggcgtcgttcccc
gtcaccgtcaagggcttgagccgcttcaccgattccgccgaggcgaaggagacgatcgcc
gccctcgccgacggcgaggtcgacatcgtcgtcggcacccaccggctgctgcagaccggc
gtgcgatggaaggacctcggtctcgtgatcgtcgacgaggagcagcgattcggcgtcgag
cacaaggagcacatcaaggccctgcgcacgcacgtcgacgtgctgaccatgtccgctacg
ccgattccgcgcaccctggagatgagcatggccggcatccgcgagatgtcgacgatcctc
accccgcccgaggagcggcacccggtgctcacctacgtgggcgcctacgcggacaagcag
gtcgccgccgccatccgccgcgagctgctgcgcgacggacaggtgttctacgtgcacaac
cgcgtgagctcgatcgacaaggccgccaagcgaattcgcgacctcgtccccgaggcgcgg
gtcgcggtcgcgcacggacagatgaacgaggacaccctcgaaaagaccgtgcagggcttc
tgggagcgtcagtacgacgtcctggtgtgcaccaccatcgtcgagacgggcctcgacatc
tccaacgccaacaccctcgtcgtcgaacgcgccgactcgctcgggctgtcgcagctgcac
cagctacgcggacgcgtcggccgttcccgcgagcggggttacgcgtacttcctgtacccg
cccgagaagccgctgaccgagacggcgtacgaccggctcgccacgatctcccagaactcc
gatctcggcgcgggcatggccgtggccatgaaggacctcgagatccgcggcgcgggaaac
gttctgggcgcggagcagtcaggtcacgtcgccggcgtcggattcgatctgtatgtgcgt
ctcgtcggcgaagcggtggaggcgttccgggccgccgcggacggccgccccgtcgccacg
gaggaggccgccaaggaggtgcgcgtggatcttccggtcgacgcccacatcccgccggac
tacgtgacctccgaccggctgcggctcgaggcctaccgcaagctcgcggcggcgcacgac
gacgacgcgatcgccgcggtggtcgaggaactcgtcgaccggtacggtccgctgcccgag
gaggtcggccggctcgtgtcggtggccaagctgcgcctgctgtgccgcgagtacgacctc
gaggaggtcgcggtctccggcacccagttgaagatctcgccgatgcacctgccggattcg
aagcagatgcggctcaagcggctctatccggcggcgcagtaccgcgccacgagcggcatc
gtgcaactgccgttgccgcggaccggcggcgtgggttccgagcgggtgcgcgacgtcgag
ttgctgcagtacatcgcggacttcctgctcgccctggacggcaaggcgcagggatcggtg
gatgtgcgcgtgccgaccgccgcgagcgtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system