KEGG   Cereibacter sphaeroides ATCC 17029: Rsph17029_1443
Entry
Rsph17029_1443    CDS       T00484                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rsh  Cereibacter sphaeroides ATCC 17029
Pathway
rsh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rsh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Rsph17029_1443
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsh03400]
    Rsph17029_1443
Enzymes [BR:rsh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Rsph17029_1443
DNA repair and recombination proteins [BR:rsh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Rsph17029_1443
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII MFD_D3 AAA_16 SecA_DEAD RecG_dom3_C AAA_30 UB2H
Other DBs
NCBI-ProteinID: ABN76553
UniProt: A3PJN7
Position
1:complement(1500420..1503917)
AA seq 1165 aa
MQNGTRILLGGAPEGYDARLVAKELDRGAPVIHVARDDKRLEAMRTALAVMAPRAVVLEL
PAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAATQRIPAREVLRAASF
SARVGDRVDEERLRSYLARMGFSLTDTVTEPGDYAIRGGIVDIYPPGVAGPVRLDFFGDV
LDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHQGMEHWLPFFHARLETLFDYLPEASVMLDDQVTPARISRWEGIADQYDARREAM
TAKGRLDTVYKPAAPDLLYLDEAAWEAAVAGHRVIQLSPLAQSPGPGVLDAGGRMGRSFA
PERQAENISLFGALVDHVCRLREDRQVVIASWSEGARERLKGLLEEAGLQGTKLAQDIRD
VPEGRGGTHLMVWALEQGFTAPGLAVISEQDVLGDRLISKPKKRRKAENFLREHDTLTPG
DLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHLVYAEDAKLYLPVENIELLSRYG
HEEGLLDKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSAR
FPYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVIC
PTTLLARQHFRSFAERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHALLAK
GVKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSII
ATPPVDRLAIRTYVSEFDTVTIREALLRERYRGGQSFFVVPRLSDLPDMEAFLRDHVPEV
SYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQL
YQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLRGAG
NLLGEEQSGHIKEVGYELYQQMLEETIQKIRSGELQGLSEPDEQWAPQINLGVPVLIPEE
FVPDLDVRLGLYRRLSGLTTKVELEGFAAELIDRFGPLPREVNTLLLVVRIKAMCKRAGI
SRLETGPRGATVQFHNDKFANPAGLVDFIKAQGETARVKDNKIVLARDWKTEGERIKGAF
AIARDLAEKVVKPEKTPAKVARPAG
NT seq 3498 nt   +upstreamnt  +downstreamnt
atgcagaacggaacgcggatcctcctcggcggtgcgcccgagggctacgatgcccggctg
gtcgcgaaagagctcgaccgcggtgcccctgtcattcacgtcgcgcgcgacgacaagcgg
ctcgaggccatgcgcacggcgctggccgtcatggcgccgcgcgccgtggtgctggagctt
ccggcctgggactgtctgccctacgaccgggtctcgcccaaccccgagatttcggcgcgg
cggatggcgacgctcgccgccctggcgcacgggatgccgggggccttcgtcctgctgacc
acgctcaatgccgcgacccagcgcattcctgcgcgcgaggtgctgcgggcggcctccttc
tcggcccgcgtgggcgaccgggtggatgaagaacggctccggtcctatctcgcccgcatg
ggattctcgctcaccgacacggtgacggagcccggcgactatgcgatccgcggcggcatc
gtcgacatctatccgccgggtgtggcggggccggtgcggctcgatttcttcggcgatgtg
ctggacggggcgcgccgcttcgaccccgagacccagcgcacggtcgagaagctcgacctc
gtggagctggccccggtgtcggaggtgatgctggacgagggtgccattacccgcttccgc
cagaactatcggatcgagttcggcgcggcggggacggacgacccgctctacgaagccgtg
tcggcgggccgcaagcatcaggggatggagcactggctgcccttcttccacgcgcggctc
gagacgctcttcgactatctgcccgaggcgagcgtgatgctcgacgatcaggtgacgccc
gcgcggatctcgcgctgggaggggatcgccgaccagtatgacgcgcggcgcgaggcgatg
acggcgaagggccggctcgacacggtctacaagcctgccgcgccggatctcctctatctc
gacgaggccgcctgggaggcggccgtggccgggcaccgggtgatccagctctcgccgctg
gcccagagccccgggccgggcgtcctcgatgcgggcgggcggatggggcgcagcttcgcg
cccgagcgtcaggccgaaaacatcagcctgttcggtgccttggtcgatcatgtttgcaga
ttgcgcgaggatcggcaggtggtgatcgccagctggtccgaaggcgcgcgcgagcggctg
aaggggcttctcgaggaagccggcctgcagggcacgaagctcgcgcaggacatccgcgac
gtgcccgagggacgcggcggcacgcatctgatggtctgggcgctggagcagggcttcacc
gcgccgggcctcgccgtgatctcggaacaggacgtgctgggcgaccggctgatctcgaag
ccgaagaagcgccggaaggccgagaacttcctgcgcgagcacgacacgctgacgcccggc
gatctcgtcgtccatgtcgagcatggcgtgggccgctacatgggcctcgagacgctgcgg
gtgccgcagccgccctcgaacaagccggggccgccgcacgattacctgcatctcgtctat
gccgaggacgcgaagctctacctgccggtcgagaatatcgagcttctgagccgctacggg
cacgaagaggggctgctcgacaagctgggcggcggggcgtggcaggccaagaaggcgcgc
ctcaaggagcggatccgcgagattgccgagcggctcatgcggatcgcggccgagcggcac
ctgcgccatgcgccgatcctcgaggcgccgcattcgctctgggaggccttctcggcccgc
ttcccctatcaagagacggacgaccagctgtcggccatcgcggatgtggtgaaggacctc
gaatccggcagcccgatggaccggctcgtggtgggcgatgtgggcttcggcaagaccgag
gtcgcgatgcgggcggccttcgtggcggcattggcgggcatgcaggtggccgtcatctgc
ccgaccacgcttctcgcccgtcaacatttccgcagctttgccgagcgcttccgcggcttt
ccgatgaaggtgcgtcaactgtcgcgcttcgtctcggccaaggaggcagccgagacgcgg
gcgggcctcgccgacggcacggtggatatctgcatcggcactcacgcgcttctggccaag
ggcgtgaagctgaagaacctcgggctcctcatcatcgacgaggagcagcatttcggcgtg
tcgcacaaggagcggctgaaggagatgcgctccgaggtccatgtgctgacgctgaccgcg
acgcccattccgcggacgctgcagctgtcgctgacgggcgtgcgggacctctcgatcatc
gcgacgccgcccgtggaccggctcgccatccgcacctacgtctcggaattcgacacggtg
acgatccgcgaggcgctcctgcgcgagcggtatcggggcgggcaaagcttcttcgtcgtc
ccgcggctctcggatctgcccgacatggaggccttcctgcgcgaccatgtgcctgaggtc
tcctatgtggtggcgcacggccagctggcggcgggcgagctcgacgagcggatgaatgcc
ttctacgacggcaaattcgacgtgcttctggcgacgacgatcgtagagtcgggcctcgac
atcccgaccgccaacacgatgatcgtgcaccgcgccgacatgttcgggctgagccagctc
tatcagatccgcggccgggtgggccgggccaagacgcgggcctattgctatctcacgacg
aagccgcgcgcgccgctcacgccgcaggcgatcaagcggctgcggctgctcgccagcctc
gacagtctcggcgcgggcttcaatctcgcctcgcacgacctcgacctgcgcggcgctggc
aacctcctcggtgaggaacaatcgggccatatcaaggaggtgggctacgagctttaccag
cagatgctggaggagacgatccagaagatccgctcgggcgagctgcagggcctgagtgaa
cccgacgagcaatgggcgccgcagatcaacctcggcgtccccgtgctgatccccgaggag
ttcgtgcccgatctcgacgtgcggctcgggctttaccgcaggctctcgggtctcacgacc
aaggtcgagctcgaagggttcgcggccgagctgatcgaccggttcggcccgctgccgcgc
gaggtcaacacgctcctcctcgtggtgcgcatcaaggccatgtgcaagcgcgcgggcatc
tcgcggctcgagaccggcccgcgcggggcgacggtccagttccacaacgacaagttcgcc
aatccggcgggccttgtggatttcatcaaggcgcagggcgagacggcgcgggtgaaggac
aacaagatcgtgctcgcgcgcgactggaagaccgaaggcgaacggatcaagggcgccttc
gccatcgcccgcgatctggccgagaaggtggtgaagccggagaagacccccgccaaggtc
gctcgacctgcgggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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