KEGG   Rhodovulum sulfidophilum: NHU_00866
Entry
NHU_00866         CDS       T04143                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
rsu  Rhodovulum sulfidophilum
Pathway
rsu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NHU_00866
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsu03019]
    NHU_00866
   03400 DNA repair and recombination proteins [BR:rsu03400]
    NHU_00866
Enzymes [BR:rsu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NHU_00866
Messenger RNA biogenesis [BR:rsu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NHU_00866
DNA repair and recombination proteins [BR:rsu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      NHU_00866
SSDB
Motif
Pfam: UvrD-helicase DEAD AAA_19 Helicase_C UvrD_C UvrD_C_2 ResIII Viral_helicase1 AAA_11
Other DBs
NCBI-ProteinID: BAQ68034
UniProt: A0A0D6B001
Position
881243..886927
AA seq 1894 aa
MSGRAVVPLPAASGTSLRSGPTAKLRGFVRRVLIVTHKPMEMRHNQLLSRCLSIDLEVDP
SRAKIFGIAAVRGDERPVLKSMEGISEEFLDQLEAQVGDVAHPIGHNFLKHDLEHLIAKR
PRLGQIIQAPIDTLWLNPLAFPRNPYHHLVKHYHDGRLATGHVNDPELDARLVFEVLANQ
LDAFATLAEDAPDALAAYHYLTTRMERADGFDALFSYLRGKSCPSYDEAAAAITRLLDGR
ACGLRVEQTLRRLSSPQNGWPMAYAISWITVAGGDSVMPPWVRSQFREASLIVKHLRDTS
CKDPACTWCAEQNDPVRALERWFGFPSFRPKPVDPEGRPLQERIVDEAMSGNSLLGILPT
GTGKSLCYQVPALSRFDKIGALTVVISPLVALMADQVQGMERAGISCSVTINGMMSMPER
QDALDKVRMGDAGILIISPEQLRSTSIRSVLAQREVGLWAIDEAHCVSKWGHDFRPDYRY
LGRFIREFSGDQPPAPVLCLTATAKPEVVADIIEHFQSKAGVELLPLDGGASRTNLAFEV
RPTNKASKLSDVMDVLDELLPAEGRSGAVVYCSSRKETERVAEFLKSQGVDAAHFHAGMS
ADDKQVVQEQFRVGELRVIAATNAFGMGIDKPDIRLVVHADIPGSLENYLQEAGRAGRDR
EDAHCVLLFAADDVERQFRLTASSRLARHEIGAIVKALRRIDERTKKTGKVVATSGEIVR
SEKDQEFERDSATDDTRVKTAVSWLEEAHLVSREENRVQVFPSSLRVRSVDEAKQRLAGA
DLTLAHRNQLLAIVAHLVSTPADEGVSTDELCGVAGISPGALPKAMSTLETLGIARNDVA
MTVFVHVGVASSSAQRLARASGLESDLVALMQELAPDMDDRTPVPLNLSETCQRLRDKNH
PDVRPDAVDRLVRGIAQDGRSQDGGRGNISLRKVSRNTLMVTLVRPWKTVRATANLRWQA
AELLLTYLTGRLDKGVRGKDLQVETTVGDLLAQLNQDAFLKTSGIGDMTKLMERALMWLH
EQGVVTLGKGLTVFRSAMTVYLDPAGGQFTQAHFAPLEDHYGEQTLQTHVMATYAETGLR
AMSDASRLSEDYFLLNKEQFMKRWMPGMGREVRRQTTSASWEAIVEKLGNKVQQEIVTDD
RDRTNVLVLAGPGSGKTRVLVHRIAYLLRMKREDPRGILVLAYNRHAAAEIRVRLRSLVG
DDAIGVTVSTCHALAMKLVGASFVGQRAETEDFDGIVLEAVRQLEGEGLSKSEAEAQRET
LIQGYRWILVDEYQDIGPEEYQLISAVAGRSLEDADLKLSLFAVGDDDQNIYAFNGASVG
FIRQFEEDYKARPAFLVENYRSTNHIIAAANAVISAAPDRMKVDHEIRINADRRRDPEGG
VLAKVDGVGQGRVQLLNVPSGDVRQAIAAVDEMVRLSKLDPEWSWARTAIISRDWKRLGA
VRMYAEKRGIKVEMANQDLPNIWRLREIQALVASLRRRQGELLGVADIIDLLNEQSSNKW
VDLLAEGIAELARELKTKTMPVPDIVEWLAEWSRETRGEQRGLLLLTAHRAKGLEFDHVA
ILDGGWDRASKNEDRDAPRRLFYVAMTRAQKGLIVMASGEHAFLKPGTPCVVERQVVPQF
PAGGLPSRVYHLPNLKHADLSYAGRQGDRHEVHRAIQECRVGDPLHLAHRASNWELLDRH
GRLVGRMSKSWEHPPGQILLSGAIGAVVQWRKSDGDEKYAHYARRDAWETVLPELVFAPP
GQVPSAATLPDTAVESVESQTNPSGCTEIRGGQRAKAVTPDDADALAALAQRIYNESRSW
DEFIDSFKERGFEVVPKGGGLVLKDGRDGRELCKMSALGLSYKEMVLGFEEGCPGHPSPS
MADYALGKKRAGQPKPQRRSKPSTQEDDFDIIDE
NT seq 5685 nt   +upstreamnt  +downstreamnt
atgagcggtcgggcggtcgtgccactgcccgccgcatcaggcacgtcattacgttcgggc
cccaccgcaaaattaaggggctttgttcgacgcgttctcatcgttactcataagcctatg
gaaatgcgtcacaaccaacttttgtctcggtgcctgtcaatcgatctcgaggtcgatcct
tccagggcaaagatctttggtatagcggccgtgcgcggtgatgaacggccggtgctgaag
tcgatggaagggatttccgaagagttcctcgatcagctcgaagcgcaggtcggtgatgtg
gcccatcccattggtcataacttcctgaagcacgacctcgaacatctgatcgcgaaacgg
ccccgtcttggccagatcattcaggcaccaatcgataccctgtggctgaacccactcgcc
ttcccgcggaacccataccaccaccttgtgaagcactaccacgacgggcgccttgccacc
gggcatgtaaacgatcccgaactggacgcgcgccttgttttcgaggtgctcgccaatcag
ctggatgcttttgcaacgctggcggaggatgcgcccgacgcgctggctgcctaccattat
ctgaccacgcgcatggaacgcgccgacggctttgatgccctgttttcctacctgcgcggc
aagagttgcccaagctatgacgaggctgctgccgcgatcacgcggttgctcgacgggcga
gcgtgcgggttgcgtgtcgaacagacgctgcgacgcctcagcagccctcagaacggctgg
ccgatggcctatgccatctcttggattacggtggcaggcggcgactccgtcatgcctccc
tgggtgaggtcgcagttccgcgaggcctccttgatcgtcaagcacctgcgggacacctcc
tgcaaggatccggcctgcacctggtgcgccgagcagaacgacccggtgcgcgccctggaa
aggtggttcgggttccccagcttccgccccaagccggtcgacccggagggacgcccgctg
caggaacgcatcgtcgacgaggccatgtccggcaacagcctgctggggatcctgccgaca
gggacgggcaagtcgctgtgctaccaggtgccggcgctgtcgcgcttcgacaagatcggt
gcgctgacggtggtgatttctcccctggtcgctttgatggcggatcaggtgcaggggatg
gagcgtgccgggatctcctgctcggtcacgatcaatggcatgatgtccatgccggaacgt
caggatgcgctcgacaaggtccggatgggcgacgccgggatcctcatcatctctcctgag
cagcttcgcagcacctcgatccgtagcgtgctggcgcagcgcgaagtggggctttgggcg
attgacgaggcgcactgcgtgtcgaagtgggggcatgatttccggccggattatcgctac
cttggccgcttcatcagggagttctcgggggatcaaccacccgcgcctgtgctctgcctc
accgcgaccgcaaagcccgaggtcgttgcggatatcatcgaacacttccagtccaaggcc
ggagtcgagctgttgccgcttgacgggggcgcctcgcggacaaacctggcgttcgaagtg
cggccgacgaacaaggcatccaaattgtcggatgtgatggatgtcctcgacgaacttctg
cccgccgagggacgctctggggcggtggtttattgttcctcgcgcaaggaaaccgagcgg
gtggccgagttcctgaagtctcagggcgtggatgcggcgcatttccatgccgggatgagc
gcggatgacaagcaggtcgtgcaggaacagttccgggtaggcgagctgcgcgtgatcgcc
gcgaccaacgccttcgggatggggatcgacaagcccgacatccgcttggtcgtccacgcc
gatatcccgggctctttggaaaactaccttcaggaggccgggcgcgccggacgagaccgc
gaggacgcccattgcgtcctgttgtttgcggctgacgatgtggaacggcagttccggctt
acggccagttcgcgccttgcgcggcatgaaatcggggcgatcgtcaaggcgcttcgccgt
atcgacgagcggacgaagaagaccggcaaggtcgtcgcgacatcgggtgagatcgtccga
tccgagaaagaccaggagttcgaacgcgacagcgccacggacgacacccgcgtcaagacg
gccgtgtcctggctggaggaagcgcatcttgtatcgcgggaagagaaccgggttcaggtg
ttcccgtcctccctgcgtgtgcggtctgtggatgaggcgaagcagcggttggccggggca
gacctgacgctagcgcatcgcaaccaacttctggccatcgtggcgcatctggtctccacc
ccggctgacgaaggcgtgtcgaccgatgagctttgcggtgtggcggggatatcacccggt
gcgctgccaaaggccatgtcgacgctggaaacactgggcatcgcacgcaacgatgtcgcg
atgacggtctttgtccacgttggcgttgccagttcctcggcacagagactggcgcgggct
tcaggacttgagagcgatctggtcgcgctcatgcaggagctggcgccggacatggatgac
cgaaccccagttccgctgaacctttctgaaacctgtcagcgtttgcgcgacaagaaccac
ccggatgtcaggcccgatgcggtcgacaggctggtgcgggggattgcccaggatggccga
agccaggacggcggtcgcgggaacatctctctgcgcaaggtcagtcgcaatacgctgatg
gtcactctggtgcgaccttggaaaacagttcgggcaacggcaaacttgcggtggcaagcg
gccgagctgctcctgacctatctgacaggccgtctcgacaagggggtgcggggcaaggat
cttcaggtcgagacgacggtcggcgacctgctggcacagctgaatcaggatgccttcctg
aagaccagtggcattggtgacatgaccaagctcatggagcgggcgcttatgtggctgcat
gagcagggcgtggtgacgctcggaaaggggcttacggtgttccgctctgccatgacggtc
tatctcgatcctgcaggggggcagtttacccaagcgcatttcgcgccgctggaagatcac
tacggcgagcagacactccagacccatgttatggcgacctatgccgaaaccgggctgcgg
gcgatgagcgatgcgtcacgcctgtcggaggactacttcctgctcaacaaggagcagttc
atgaaacggtggatgccgggcatgggccgcgaggtccgacggcagaccaccagcgcctct
tgggaggcgatcgtcgagaagctgggcaacaaggtccagcaggagatcgtgacggatgac
cgggaccggacgaatgttctggtcctggcgggcccggggtcaggcaagacgcgggtgctg
gtccatcggatcgcctatctgctgcgtatgaaacgcgaggacccgcgaggtattctggtt
ctcgcctacaaccggcacgcagcggccgaaatccgcgtgcggctgcggtctctggtcggc
gacgatgccattggcgtcaccgtctcgacctgtcatgcgctggcgatgaagcttgtgggg
gccagttttgtgggccagcgggccgagaccgaagatttcgatggcatcgtattggaggcg
gtgcgccagctcgagggcgaagggctgtcgaaatccgaagccgaagcacagcgggagacc
ttgattcagggctatcgctggatcctcgtggacgaatatcaggacatcgggccggaagag
tatcagcttatctcggcagtcgctggcagatctctcgaggatgccgacctgaagctcagc
cttttcgccgtcggggacgacgatcagaacatctatgcgttcaatggcgcctccgtcggt
ttcatccggcagttcgaagaagactacaaagcgaggccggcgttcctggtcgagaactat
cgttccaccaaccacatcattgcggcggccaatgcggtgatttcggcggcgccggatcgg
atgaaggttgatcatgagatcaggatcaacgcagatcgcaggcgtgatcctgaggggggc
gtcctcgcaaaggtggatggggttggacagggccgggttcagctcctgaatgtcccctcc
ggcgatgtgcgccaggcaatcgctgccgtcgacgagatggtgcggctgtcgaaactggat
ccggagtggtcctgggcccgtaccgccatcatctctcgtgactggaagaggcttggcgct
gtccggatgtatgctgaaaagcggggtatcaaggtcgaaatggccaatcaggacctgccg
aacatttggcggctacgcgagatacaggcgctcgtggcaagtctgcgtcggcgacaggga
gagctgctgggcgttgccgacatcatcgacctcctcaacgagcagtcgagcaacaagtgg
gtcgacctgttggcagaaggcatcgccgaactggcaagagagctgaagacaaagactatg
cctgtgcccgatatcgtcgaatggctggccgaatggtcccgtgagacacggggcgagcag
cgcgggctgctcctgctgacagcgcaccgggccaaggggcttgagttcgatcatgtggcc
attctggatggcggttgggaccgggcatcgaagaacgaagaccgtgatgctccgcgccgc
cttttctacgtcgcgatgacgcgtgcccaaaagggcctgatcgttatggcttcgggcgag
catgcgttcctgaaacccggcactccctgtgtcgttgagagacaggtcgtgccgcagttc
ccggctggaggactaccttcgagagtctaccatctgccgaacctaaagcatgccgacctg
tcatatgccggtcgccagggagatcggcacgaggtccaccgcgcaatccaggaatgccgg
gtgggtgacccgttgcacctggcccaccgagcctccaactgggagctgctggaccggcat
ggccgcctcgtaggacgcatgtcgaagtcatgggagcatccgccggggcagatcctgctt
tcgggtgcaattggagctgtggtccagtggcgcaagtcggatggtgacgagaaatatgcg
cactacgcgcgtcgagatgcttgggagaccgtccttcccgaactggtttttgctccaccg
ggacaagtaccttctgctgcaacgttgcccgacacagctgtcgagagtgtcgaatctcag
accaatccgtcaggctgcacggagatccggggcgggcagcgtgcgaaagccgtcacgccg
gatgatgcggatgcactcgctgcgcttgcgcagcgcatctacaacgaaagccggtcgtgg
gacgaatttatcgacagcttcaaagaacggggttttgaagtggtccccaagggtggcggc
ctcgtgctcaaggacgggagagatgggcgcgagctttgcaagatgtctgcattgggcctc
agctacaaggagatggtgctgggcttcgaggaagggtgtcccggccatccgtctccctcc
atggcggactacgctctaggaaagaagagggcaggtcagccgaagccacaaaggcgaagc
aagccttcgacccaagaagatgacttcgacatcatagatgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (48)   

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