KEGG   Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01165
Entry
RBI_I01165        CDS       T03158                                 
Symbol
gcdB
Name
(GenBank) sodium ion-translocating decarboxylase, beta subunit
  KO
K20509  carboxybiotin decarboxylase [EC:7.2.4.1]
Organism
rus  Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus00362  Benzoate degradation
rus00620  Pyruvate metabolism
rus00650  Butanoate metabolism
rus01100  Metabolic pathways
rus01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:rus00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00620 Pyruvate metabolism
    RBI_I01165 (gcdB)
   00650 Butanoate metabolism
    RBI_I01165 (gcdB)
  09111 Xenobiotics biodegradation and metabolism
   00362 Benzoate degradation
    RBI_I01165 (gcdB)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rus02000]
    RBI_I01165 (gcdB)
Enzymes [BR:rus01000]
 7. Translocases
  7.2  Catalysing the translocation of inorganic cations
   7.2.4  Linked to decarboxylation
    7.2.4.1  carboxybiotin decarboxylase
     RBI_I01165 (gcdB)
Transporters [BR:rus02000]
 Other transporters
  Primary active transporters [TC:3]
   RBI_I01165 (gcdB)
SSDB
Motif
Pfam: OAD_beta
Other DBs
NCBI-ProteinID: CCO04878
UniProt: W0U472
Position
I:1310512..1311735
AA seq 407 aa
MSIINSFLDTMASLASQSGFAGFLVDGGWKNIIMILISFVFMYLAIAKGFEPLLLLPISF
GMLLTNLPYAEMYHPDFWNYKTVAGNDHYIDYGQILQKGGLLDILYMGVKLQIYPPLIFL
GIGAMTDFGPLIASPKSFLMGAAAQGGIFFTFIGAALFGMSAAECGSIAIIGGADGPTSI
YVSSRLLTSNSNIGVGTIALAAYTYMALVPIIQPPIMKALTTKKERSVVMGQLRPVSKVE
KLIFPILVTIVISLMVPSAAPLVGMLMFGNLLKESGVCDRLVKTAQNELMNIITIFLGVT
VGATTQADKIMNIQFAEVMALGVVAFSIGTACGVLLGKLMYVLSGHKINPLIGSAGVSAV
PMAARISQKVGQQEVPTNYLLMHAMGPNVAGVIGSAVAAGVLLTIVR
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgtcaataattaattcatttcttgataccatggcgtctttggcgtcacagtcgggtttt
gcgggtttcctcgtagacggcggctggaaaaatatcataatgatacttatttcattcgta
tttatgtatctggctattgcaaagggctttgagccgcttctgcttttgcctatctcattc
ggtatgctgcttacaaacctgccatacgctgagatgtatcatccagacttctggaactac
aaaacggttgcaggcaatgaccactatatagattacggtcagatacttcaaaagggtggt
ctgttggatattctttacatgggcgttaagcttcagatctatccaccactcatattcctt
ggaatcggtgcaatgacagactttggtccgctgatcgcaagccctaagagctttcttatg
ggtgctgctgcacagggcggtatcttctttacattcatcggtgcggctctcttcggcatg
agtgctgctgagtgcggttctattgctatcatcggcggtgctgatggtcctacatctatt
tatgtatcttcaagacttctaacctcaaacagtaatatcggcgttggtactattgcactt
gcagcctatacatatatggctcttgttcctattatccagccgcctatcatgaaggctctt
acaacaaagaaagagcgttctgtagtaatgggtcagctaagacctgtttctaaggtagaa
aagcttattttccctatcctcgtaactatcgttatctcactcatggttccttcagcagct
ccactggttggtatgctcatgtttggtaaccttcttaaagagagtggcgtctgcgacaga
cttgttaagactgctcagaacgagcttatgaacatcatcactatcttccttggtgtaaca
gttggtgcaacaacacaggcagataagatcatgaacattcagtttgcagaagttatggca
cttggcgttgtggcattctcaattggtacagcctgcggcgtacttcttggtaagcttatg
tatgttctttcaggtcacaagatcaatcctcttatcggttcagcaggtgtatctgccgtt
ccaatggcagctcgtatctctcagaaggtcggtcagcaggaagttcctacaaactatctg
ttgatgcacgctatgggtcctaatgttgccggcgttatcggttcagccgttgctgctggt
gttcttcttacaattgtaagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system