KEGG   Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01390
Entry
RBI_I01390        CDS       T03158                                 
Symbol
ddl
Name
(GenBank) D-alanine-D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
rus  Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus00470  D-Amino acid metabolism
rus00550  Peptidoglycan biosynthesis
rus01100  Metabolic pathways
rus01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:rus00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    RBI_I01390 (ddl)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    RBI_I01390 (ddl)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    RBI_I01390 (ddl)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:rus01011]
    RBI_I01390 (ddl)
Enzymes [BR:rus01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     RBI_I01390 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:rus01011]
 Precursor biosynthesis
  Amino acid ligase
   RBI_I01390 (ddl)
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp CPSase_L_D2 ATP-grasp_3 ATP-grasp_4 RimK ATPgrasp_ST GARS_A
Other DBs
NCBI-ProteinID: CCO05102
UniProt: W0U5L6
Position
I:1549646..1550728
AA seq 360 aa
MSKIRVAVIFGGKSNEHDVSVVSATHVIKSIPKDKYDVICIGITKKGHWMKYIGDVDDIA
SNKWEQHPDNVPCVLSPDPLHKGFIALGENGEYQNVKVDVIFPVLHGKNGEDGTIQGLFQ
LAEIPFVGCDCISSANCMDKGLTHTVLDANGIKTAKWVGIITSELSHLDKKCDEMESKLG
YPMFVKPANCGSSVGVSKAKNRDELKSAIKLAFAHDSKVIVEETIVGMECECAVMGNDEP
FASTVGEVCSANDEFYDFDAKYNDAASKTLIPARMSEESIEEIRKTAVKAYRAMGCSGLS
RVDFFLMKDGTVILNEINTLPGHTPISMYPQLMQYEGMTPAQQEDKLIKLALDKAEVDYE
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgtctaagatccgagttgccgttattttcggcggaaaatcaaacgagcacgacgtatct
gttgtttctgcaactcacgttataaagagtataccaaaggacaaatatgatgttatttgt
atcggaataacaaaaaaaggtcactggatgaaatatataggagatgttgacgatattgcg
tcaaacaaatgggaacagcaccctgataatgttccatgcgttctcagccctgaccctctt
cacaagggctttatcgctcttggcgaaaacggcgaatatcagaatgtaaaagttgacgtt
attttcccagtccttcacggaaagaacggtgaagacggcactattcaggggctttttcag
cttgctgagataccatttgtaggctgtgactgcatatcctctgcaaactgcatggataag
ggacttacacacactgttcttgacgcaaacggcataaagacagcaaagtgggtaggcatt
ataacctcagagctttcacatcttgacaaaaagtgcgacgaaatggaaagcaagcttggc
tatcctatgttcgtcaagcctgcaaactgtggttcttcggtgggcgtttcaaaagctaaa
aacagagacgagcttaaatctgctatcaagcttgcatttgctcatgacagcaaggtcatt
gtagaagaaactatagtaggcatggagtgcgagtgtgcggtaatgggcaatgacgagcct
tttgcttcaactgtcggtgaagtatgctccgcaaatgacgagttttacgattttgacgca
aaatataatgacgccgcttccaaaacgcttatccctgcaagaatgagcgaggaaagcatt
gaagaaataagaaagacggctgtcaaggcatacagagcaatgggctgcagcggactttca
agagtagacttcttccttatgaaagacggcactgttattcttaacgagataaatactctc
ccaggtcacacgcctataagtatgtatccacagcttatgcagtacgagggaatgacccct
gcacagcaggaagataagcttatcaagctggcacttgataaggcggaggttgattatgaa
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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