KEGG T00368: Rxyl

Rubrobacter xylanophilus: Rxyl_0005

Entry

Rxyl_0005         CDS       T00368

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

rxy Rubrobacter xylanophilus

Brite

KEGG Orthology (KO) [BR:rxy00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rxy03032]
    Rxyl_0005
   03400 DNA repair and recombination proteins [BR:rxy03400]
    Rxyl_0005
Enzymes [BR:rxy01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Rxyl_0005
DNA replication proteins [BR:rxy03032]
Prokaryotic type
  DNA Topoisomerases
   Rxyl_0005
DNA repair and recombination proteins [BR:rxy03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Rxyl_0005

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

ABG02986

UniProt:

Q1B042

Position

4458..6392

AA seq 644 aa
MVARTAAKHSKSDYDASSIQVLEGLEAVKRRPGMYIGSTGPRGLHHLVWEIVDNSIDEAL
AGYCTEISVTVHPDNSVTVSDDGRGMPVGVMEKYGKSAAEVIMTTLHAGGKFDGQTYKVS
GGLHGVGASVVNALSEWLELEIRRDGHLWTQRYERGFPVTGLERGRKLGKREGTGTTVRF
RPDPQIFETVEFSFDTLSRRFRESAFLNKGLRIRLADEREEGREVVYRYEGGIKDFVAHI
NEAKDPVHKTILYFHREEEAGDVEVAMQWNSGYQDSVFTFANNINTHEGGTHLSGFRAAL
TRTINEYARQKGLLKEKEENLTGDDIREGLAAVISVKLREPQFEGQTKTKLGNTEIKGLV
ESATNRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAIRKGYLESSTLPGKLADC
SSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLSNAEIQAM
ISAIGAGVGDSFNIEEARYHKIVIMTDADVDGSHIRTLVLTFLYRNMPELIEAGYVYIAQ
PPLYKITHNRRDVYVYSDAELQETLRRLRADGSATVSRFKGLGEMNPQQLWETTMDPANR
TLLQVTIDSAATADELFTALMGDKVEPRKAFIEANAREAKNIDA

NT seq 1935 nt +upstreamnt +downstreamnt
ttggtagccaggaccgcagccaagcattccaagagcgactacgatgcaagctccatccag
gttctggaggggcttgaggccgtcaagcggcggccggggatgtacatcggctccaccggg
ccgcgggggctgcaccacctcgtatgggagatcgtggacaactccatagacgaggccctc
gccgggtactgcacggagataagcgtcaccgtgcacccggacaactccgtgaccgtctcc
gacgacgggcgcggcatgccggtgggggtcatggagaagtacggcaagtccgccgccgag
gtcatcatgaccacgctgcacgccggcggcaagttcgacggccagacctacaaggtctcc
ggcggcctgcacggcgtgggggcctcggtggtaaacgccctctcggagtggctggagctc
gagataaggcgcgacggccacctctggacccagcgctacgagcggggcttccccgtcacc
gggctcgagcggggcaggaagctcggcaagcgggaggggacgggcacgaccgtgaggttt
cggcccgacccccagatcttcgagaccgtcgagttctccttcgacaccctgagccgccgc
ttcagggagtccgcctttctcaacaaggggctcaggataaggctcgccgacgagcgggag
gaggggcgcgaggtcgtctaccgctacgaggggggcataaaggacttcgtggcccacata
aacgaggccaaggacccggtccacaagaccatcctctacttccaccgggaggaggaggcc
ggcgacgtggaggtcgccatgcagtggaactccgggtaccaggactcggttttcaccttt
gccaacaacatcaacacccacgagggcggcacgcacctctcgggcttcagggccgcgctg
accaggaccatcaacgagtacgcccgtcagaaggggctgctcaaggagaaggaggagaac
ctcaccggcgacgacatccgggaggggcttgcggcggtcatctccgtcaagctgcgcgag
ccgcagttcgaggggcagaccaagaccaagctggggaacaccgagataaaggggctcgtc
gagagcgccaccaaccggcatctggccgagtttctggaggagaacccgggccaggcgcgg
gccatcgtgaccaaggccataaacgcgagccgggcgcgccttgcggccagcaaggcccgc
aaggccataagaaaggggtatctggagagctccacgctccccggcaagctcgccgactgc
tcctccaaggacccggccaggagcgagctgtacatcgtggagggcgattcggcgggcggg
tcggccaagcagggcagggaccgcaacttccaggccatcctgccgctgcgcggcaagatc
ctcaacgtcgagaaggccaacataaacaaggtgctctccaacgccgagatacaggccatg
atcagcgcgatcggggccggcgtgggcgactcgttcaacatcgaggaggcgcgctaccac
aagatcgtcatcatgaccgacgccgacgtggacggcagccacataaggacgctcgttctg
accttcctctaccggaacatgcccgagctcatagaggccggctacgtctacatcgcgcag
cctccgctctacaagatcacccacaaccggcgcgacgtctacgtctacagcgacgccgag
ctgcaggagaccctgcggcggctgcgggccgacggcagcgccaccgtctcgcgcttcaag
gggctcggggagatgaacccgcagcagctctgggagaccaccatggacccggccaaccgg
acgctgctgcaggtcaccatcgactccgcggccaccgccgacgagctcttcaccgcgctc
atgggcgacaaggtagagccgcgcaaggcgtttatagaggcgaacgccagggaggcgaag
aacatagatgcttga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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