KEGG   Candidatus Saccharimonas aalborgensis: L336_1032
Entry
L336_1032         CDS       T02673                                 
Name
(GenBank) putative DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
saal  Candidatus Saccharimonas aalborgensis
Pathway
saal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:saal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    L336_1032
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:saal03019]
    L336_1032
Enzymes [BR:saal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     L336_1032
Messenger RNA biogenesis [BR:saal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     L336_1032
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C AAA_19 UTP25 PseudoU_synth_2
Other DBs
NCBI-ProteinID: AGL62731
UniProt: R4PZP7
Position
999906..1001273
AA seq 455 aa
MRPRTSNSRQTSHYSPRFAGKKRTPTKRSTQEIHASRFINKAIAPVDDTPYAATHLFSDF
GLNPQTIATLGHIGYETPSPIQDRTIKPGLAGKDVIGLANTGTGKTAAFLLPIIDALATT
RTVQGALVLAPTRELAQQINDEFRRFSAGQKLYSALVVGGVNMSRQIREVQRGPHLIVGT
PGRINDLIDRNILRLASCTTFVLDEADRMCDMGFVRDIRKIESELPRKRQTFCFSATMTT
DVKAIVEEFMHDPVTVSVIKNETNDHIEQDVIHARDKAHKIELLLELLGKDGFDKVIVFC
DTKHFAQRLSDRLSKEGFTSEAIHGNKSQGQRDRALRAFKSGNVRILVATDVAARGLDIP
NVSHVINFDAPKQYEDYVHRIGRTGRAGQSGQALTFVSQPGISAPKSLTARHHERPNRSH
SVRTEPTQNTKPSHRRRLTGGAAAEDRLVRLIDTL
NT seq 1368 nt   +upstreamnt  +downstreamnt
atgcgcccacgtacaagtaactcgagacaaacgtctcactattcacctcgctttgcgggg
aaaaaacgcactccgacaaaacgatcaacgcaggaaatccacgcgagtcgttttatcaat
aaggctatcgcccctgtcgatgacacgccgtacgccgctactcacttgtttagcgacttt
ggcttgaatcctcaaacgattgcaacgcttggccacatcgggtatgagacaccatcgccg
attcaagatcggaccatcaaacctggacttgctggcaaagatgtgattggtcttgcaaat
accggcaccggtaagactgccgcctttttgctgccgattatcgatgcactcgctaccaca
cgtacagtacagggcgctcttgtccttgctcccacgcgtgaactggcccagcaaataaac
gacgagttccgacgtttttctgcaggtcagaagctctactctgcacttgtcgtcggtggg
gttaatatgagccgacagatcagggaggttcagcgcgggccacaccttatcgttggcacg
ccgggtcgtatcaatgatctgatcgatcgaaacatcttacggcttgcgagctgcaccaca
tttgtgctcgacgaagcagatcgtatgtgtgatatgggatttgttcgtgatattcgcaag
atagagtcagaattgccacgcaagcgccagacattttgttttagcgcgacgatgacaact
gatgtcaaggcgatcgttgaagagtttatgcatgatcccgtcacggtctctgttatcaaa
aacgagaccaatgatcatatcgaacaagatgttattcatgctcgagacaaggctcacaag
atcgagctgctactcgaactgctgggtaaagatggtttcgataaggtaatcgtgttttgc
gacaccaaacactttgcacagcgactttcagatcgactatccaaggaagggtttacttca
gaagcaattcacggcaataaatcccagggtcagcgtgatcgagcattacgtgcgtttaag
tcaggcaacgtccgtatcttggtggcaacagatgttgctgcacgcggactcgatattccc
aatgtttcacatgtgattaattttgatgctccgaagcaatacgaggactatgtgcaccga
atcggtcgtacaggccgcgcggggcagtcaggacaagccctgacgtttgtttcacaaccg
gggatatctgccccaaaatcactgacagcacgccatcacgaacgacccaataggtctcac
tcggttcgtaccgaacccacccaaaacaccaaaccatctcaccgtcgccgtttgacggga
ggtgctgctgccgaagaccgacttgttcgactgatcgacacattgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (31)   

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