KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111968072
Entry
111968072         CDS       T05762                                 
Symbol
thbs2
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-2
  KO
K04659  thrombospondin 2/3/4/5
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04145  Phagosome
salp04510  Focal adhesion
salp04512  ECM-receptor interaction
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111968072 (thbs2)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    111968072 (thbs2)
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111968072 (thbs2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111968072 (thbs2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:salp04131]
    111968072 (thbs2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:salp04147]
    111968072 (thbs2)
   00536 Glycosaminoglycan binding proteins [BR:salp00536]
    111968072 (thbs2)
Membrane trafficking [BR:salp04131]
 Endocytosis
  Phagocytosis
   Opsonins
    111968072 (thbs2)
Exosome [BR:salp04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   111968072 (thbs2)
  Exosomal proteins of colorectal cancer cells
   111968072 (thbs2)
  Exosomal proteins of bladder cancer cells
   111968072 (thbs2)
Glycosaminoglycan binding proteins [BR:salp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111968072 (thbs2)
SSDB
Motif
Pfam: TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 TSP1_ADAMTS TSP1_CCN cEGF Laminin_G_3 Laminin_G_2
Other DBs
NCBI-GeneID: 111968072
NCBI-ProteinID: XP_023849371
Position
LG8:50064164..50098460
AA seq 1207 aa
MVTAALTGGFALSPGDMILRRSLNLLPILLLCSSALPQDGEVTMDDDTTFDLFDISGITR
KTLGAKQFRGQDTDNPAYRFIRFDHLPSVSAPVLKQMLLQIQNNEGFVFVASMRQDRGSR
GTLIALEGANGQRQFEIVSNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITLHVHG
ENANLFVGCSLIDSFILDEPFYEHLQAEDSRMFVAKGSIRENHFRGLLQNVRFMFDTSVD
DVLRNKGCEVTKADEANVVVSESTDMEGVSPSTAITTNFIGQKTEKLGADMCERSCEELS
TMFQELKGLRVVVGNLIDGLQKVTEENTVMKDALGKMKNSKEKHMCWQDGRLFEDKEDWV
VDSCTTCTCQDSKIVCHQITCPPVACASPSFIDGECCPVCLSKDSEDGWSPWSEWTECTV
TCGTGTQQRGRSCDATSNTCSGPSIQTRKCSLGKCDSRVRQNGGWSLWSPWSSCSVTCGE
GQITRIRHCNAPTPQLGGKDCEGQGRETQRCEAKPCPIDGGWGPWSPWAICSATCGGGFK
GRTRVCNSPEPQYGGKKCPGETNDRDACNKQECPIDGCLSNPCFGGVDCNSAPDGSWECG
PCPLGFRGNGTHCEDVNECDMVSDICFKAGGASRCINTDPGFHCLSCPPRYKGTQPFGMG
VEAAKKNKQVCEPENPCKDKTHNCHRSSECIYISHFSDPXYKCECRXGYAGDGFICGEDX
DLDGWPNQELVCGANATYHCKKDNCPNLPNSGQEDFDKDGQGDACRQDDDNDGIVDERDN
CPLLYNPRQFDLMQDDVGDRCDNCPYEHNPAQIDTDHNGEGDACAVDIDGDEILNEQDNC
PYLYNNDQKDTDMDGVGDQCDNCPLLHNPDQADTDNELVGDQCDNNQDIDEDGHQNNLDN
CPYVANSNQADHDKDGKGDACDFDDDNDGIPDDRDNCRLTPNKDQLDSDGDGRGDACKDD
FDNDNIPDFLDVCPENNAVSVTNFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTVNSD
PGIAVGFDEFNAVDFSGTFYVNTDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPS
KAFGISGVSLKVVNSTTGTGENLRNALWHTGNTKNQVRTLWHDPKNIGWKDYTAYRWHLI
HRPKTGFIRVVVYEGKQILADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDKLEF
PTVLSIR
NT seq 3624 nt   +upstreamnt  +downstreamnt
atggtaactgccgctctaacagggggatttgcactttcaccaggagatatgatactcagg
agaagtctcaacctgctgcccattttattactttgctcctcagcgctacctcaagatggt
gaggttacaatggatgacgacacaacgtttgacctgtttgatattagcggtatcacgcgc
aagactctgggcgccaagcaattccgcggccaagacacggacaaccccgcttaccgcttc
atccgcttcgaccatttgccctctgtgagcgcgcccgtgctcaaacagatgcttctgcaa
atccagaacaacgagggcttcgtgttcgtggccagcatgcgccaggaccgcggctcgcgg
ggaaccctcatcgcattggaaggcgccaacggccagcggcagtttgaaatcgtctccaac
ggtcgtgccaacacgctggaccttgtctactgggtggacggctctcaaaatgttgtctcc
ttcgaggatgttgacctgtctgactcgcagtggaagaatatcacacttcatgttcatggc
gaaaatgcaaatctgtttgtgggctgcagtctcatcgacagcttcatcttggatgagcct
ttctacgagcacctgcaggcagaggatagccgaatgttcgtcgccaagggatccatccgc
gaaaaccacttcaggggcttactgcagaatgttcgcttcatgttcgacacatccgtggat
gatgttctgaggaacaaaggctgtgaagtcactaaggctgacgaggccaacgtggtggtg
agtgagagcacagatatggagggtgttagtccctccacagccatcaccactaacttcatc
ggccaaaagacagagaagctgggagcagatatgtgtgaacgatcctgtgaggaactcagc
accatgttccaggagctcaaaggactgcgggttgtagtggggaacctcattgacggcctg
cagaaagtgacagaggagaacacagtaatgaaggatgctttggggaagatgaagaactcc
aaggagaaacacatgtgttggcaggacggacggctgtttgaagataaggaggactgggtg
gtggacagctgcaccacgtgtacctgtcaggactcaaagatcgtgtgtcaccaaatcact
tgtcctcctgtggcctgtgctagcccctccttcatcgacggagagtgttgccctgtgtgt
ctgtctaaggacagtgaggacggctggtccccctggtcggagtggacagagtgtactgtc
acctgtgggacaggtactcaacagaggggacgctcatgtgatgccaccagtaacacctgc
tccggaccatccatccagaccaggaaatgcagcctgggaaaatgtgacagccgagttcgt
cagaacggtgggtggagcctgtggtctccctggtcatcatgctcagtgacgtgtggtgag
ggccagatcaccaggatacgccactgcaacgcacccacaccacaactggggggcaaggac
tgtgagggccaggggagagagacacagcgctgtgaggccaagccctgtcccattgacggt
ggttggggaccatggtcgccttgggcgatctgctcggcaacctgtgggggtggatttaag
ggtcggacccgtgtctgtaacagccccgaaccccagtacggaggcaagaagtgccccggg
gagaccaacgacagggatgcctgcaacaaacaagaatgccctatcgacggttgtctgtct
aacccatgcttcggaggagtggactgtaacagtgcccccgacggatcctgggagtgtggg
ccatgccctctcggtttccgcggcaatggaacccactgcgaagacgtcaacgagtgtgac
atggtgtctgacatatgctttaaagctggtggagcatcgcgttgcatcaacacagaccca
gggttccactgtctgtcctgcccaccccgctacaagggaacgcagcccttcggcatgggg
gtggaagctgccaagaagaacaagcaggtctgcgagccagagaacccctgcaaagacaag
acccacaactgtcaccggtcctcagagtgtatctacatcagccactttagtgacccantg
tacaagtgtgagtgcagantcggctacgctggtgatggcttcatctgtggagaggatnca
gacctggatggatggcctaatcaagaactggtgtgtggtgccaacgccacctatcactgc
aaaaaggataactgccccaacctgcctaactctggacaggaagattttgacaaagacggt
cagggagacgcttgtcgacaggatgatgacaatgatggaatcgtggatgaaagagacaac
tgtcctctcctgtacaaccccagacagtttgacttgatgcaggatgatgtgggggatcgt
tgtgacaactgcccctacgaacacaaccctgcccagatcgacaccgaccacaacggggaa
ggtgacgcctgtgctgtcgacattgatggagatgaaatcctaaacgagcaagacaactgc
ccgtacttatacaacaatgaccagaaggacactgacatggatggagtcggtgaccagtgt
gacaactgtcctctgctacacaaccctgaccaggctgacacagacaatgarcttgtagga
gaccagtgtgacaacaaccaggatatcgatgaagacggtcaccagaataacctggacaac
tgtccttacgtcgccaactccaaccaggcagaccacgataaggacggcaagggggacgcc
tgtgacttcgacgatgacaatgacggtatccctgacgatagggacaactgtagattgaca
cccaacaaagatcaactggactctgatggcgacggtagaggcgacgcctgcaaagatgac
tttgacaacgacaacatcccggacttccttgacgtgtgtcctgagaacaatgccgtcagc
gtcacaaacttccggaagtttcagatggtgcacctggaccccaagggaaccacgcagatc
gaccccaactgggtggttaggcatcagggcaaggagctggtacagaccgtcaactctgac
cctggcatcgctgttggctttgatgagttcaacgcggtggacttcagtggtacgttctac
gtgaacacggaccgggatgacgactatgctggctttgtgttcggctaccagtcgagcggc
cgcttctacgtggtgatgtggaagcagatcactcagacctactgggaagacaaaccctcc
aaggcctttggtatctctggtgtctctctcaaggtggtcaactcaactacgggcacaggg
gagaacctgagaaacgccctgtggcacacaggcaacacaaaaaatcaggtgcgcactctg
tggcacgacccaaagaacattggctggaaggattacacagcctacaggtggcacctcatc
cacagacccaagactggattcatcagggttgtggtctatgaagggaaacagatcttggca
gactcaggaccagtgtacgacaagacgtttgctggaggacggttaggcctgtttgtcttc
tcccaggaactggtcttcttctctgatctcaaatatgagtgtagagataagctggagttt
ccaactgtgttgtccatcagataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system