KEGG   Streptomyces ambofaciens: SAM23877_5746
Entry
SAM23877_5746     CDS       T04055                                 
Name
(GenBank) Ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
samb  Streptomyces ambofaciens
Brite
KEGG Orthology (KO) [BR:samb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:samb03016]
    SAM23877_5746
Enzymes [BR:samb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     SAM23877_5746
Transfer RNA biogenesis [BR:samb03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    SAM23877_5746
SSDB
Motif
Pfam: DNA_pol_A_exo1 DNA_pol_A_exoN HRDC
Other DBs
NCBI-ProteinID: AKZ58791
UniProt: A0A0K2B0W8
Position
complement(6226543..6227748)
AA seq 401 aa
MTQAPTPLLEPREGVPPVIADASALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQL
RREGAGSALIDPVACPDLSGLGTALSDVEWVLHAATQDLPCLREIGMVPTRIFDTELAGR
LAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKE
LDRQGKLEWARQEFDAIASAPPAEPRKDPWRRTSGMHKVRRRRQLAVVRELWQTRDRIAQ
RRDVSPGKVLGDAAIVEAALALPPNAHALAALNGFGRVNRRQLEQWQVAVDRARGLSESQ
LPQPGQPVTGPPPPRAWADKDPAAAARLSAARAAVTALAERLNMPQENLITPDTVRRVCW
EPPATVDAESVGAALAGHGARPWQVEQVTPALVAALGEGVS
NT seq 1206 nt   +upstreamnt  +downstreamnt
gtgactcaggcgccgacccctttgctcgaaccgcgcgagggcgttccgccggtgatcgcc
gacgcgtccgccctcgccgaggtgaccgccgccttcgccgcggggagcggtcccgtcgcc
gtcgacgccgagcgcgcctccggctaccgctacggccagcgcgcgtacctcgtgcagctg
cgccgcgagggcgccggctccgcactgatcgatccggtggcctgcccggacctgtcgggg
ctgggcaccgcgctctccgacgtggagtgggtgctgcacgcggccacccaggacctgccg
tgcctgcgtgaaatagggatggtgcccacccggatcttcgacaccgagctggccgggcgg
ctcgccggcttcccgcgggtcgggctcggcgcgatggtggagaacgtcctgggcttcgtc
ctggagaagggccactcggcggtcgactggtccacgcgcccgctgcccgagccctggctg
cgctacgccgcgctcgacgtcgagctcctcgtcgacctgcgcgacgcgctggagaaggag
ctggaccggcaggggaagctggagtgggcccggcaggagttcgacgcgatcgcgtcggcc
ccgccggccgagccccgcaaggacccctggcgccgtacctccggcatgcacaaggtgcgc
cggcgccgtcagctggccgtggtgcgggagctgtggcagacccgggaccgcatcgcgcag
cgccgcgacgtctcccccggcaaggtgctcggggacgcggccatcgtcgaggccgcgctc
gcgctcccgcccaacgcgcacgcgctcgccgcgctgaacggcttcggacgggtcaaccgc
cggcagctggagcagtggcaggtcgcggtcgaccgggccagggggctgtccgagtcgcag
ctgccgcagcccggccagccggtgaccggtcccccgcccccgcgggcgtgggccgacaag
gaccccgccgccgcggcccggctgtccgccgcacgggcggcggtgacggcgctcgccgag
cggctgaacatgccgcaggagaacctgatcacgccggacaccgtgcgccgggtctgctgg
gagcccccggcgacggtcgacgccgagtccgtgggcgcggccctcgcggggcacggagcc
cgtccctggcaggtggagcaggtgacgcccgccctggtggcggcgctcggcgagggcgtg
tcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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