KEGG   Salmo salar (Atlantic salmon): 100195259
Entry
100195259         CDS       T04363                                 
Symbol
ptbp1
Name
(RefSeq) Polypyrimidine tract-binding protein 1
  KO
K13218  polypyrimidine tract-binding protein 1
Organism
sasa  Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    100195259 (ptbp1)
   03041 Spliceosome [BR:sasa03041]
    100195259 (ptbp1)
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     100195259 (ptbp1)
Spliceosome [BR:sasa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    100195259 (ptbp1)
SSDB
Motif
Pfam: RRM_5 RRM_1 RRM_8 RRM_occluded
Other DBs
NCBI-GeneID: 100195259
NCBI-ProteinID: NP_001133760
UniProt: B5X3H0
Position
Un
AA seq 574 aa
MEGHKLDADLYPMGPGYVTDIDVSVGTKRGSDELFSSYIMTPANGNDSKKFKGEMRSPSA
PSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKGKNQAFLEMNTVDQAQTMVNYYAT
VTPLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGSTMSGMGGGMGA
TMSVGGGEMGARGMATQSPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNNQFQ
ALVQYADPMTAQHTKMSLDGQNIYNGCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDLSTG
EQHNPQPGMDQHAMAAAAFGSPGLISASPYGHGFPQAFTLQQAAGLSMPGALASFGMGPG
GMAATRLGLQALGGGGGQAGVLLVSNLNPESVTPNCLFILFGVYGDVMRVKILFNKKDNA
LVQMADGTQAQLAMSHLNGVRLHGRSLRVSMSKHTTVQLPREGHEDQGLTKDYATSPLHR
FKKPGSKNYNNIYPPSGTLHLSNIPPAVGEEDLKALFSSSGASVTAFKFFQKDRKMALIQ
MSSVEEAVESLIEFHNHDLGDNHHLRVSFSKSTI
NT seq 1725 nt   +upstreamnt  +downstreamnt
atggaaggacacaagttagatgctgatctgtatcctatgggacctggctacgtcacagac
atagatgtctcagtgggtaccaagaggggatctgatgaactcttctcctcctacatcatg
accccagccaacggtaatgacagtaagaagttcaaaggtgagatgcggagccccagtgct
ccatcgcgtgtcatccacctgcgccagctgcccggggacatccaggattctgaggtcatc
agcatgggaatgccctttgggaaggtcaccaaccttctgatgatgaagggaaagaaccag
gcgttcctggagatgaacactgtggaccaggcacagaccatggtgaactactacgctacg
gtcacccccctcatcagacagcagcctgtattcatgcagtacagcaaccacaaggaactc
aagaccgacaactcacctaaccaagtgagagtccaggcagcactgcaggcggtgaatgct
gtccagggtggcaccatgttgggctctaccatgtccggtatggggggtgggatgggcgct
accatgtcagttggagggggagagatgggagccagaggcatggccacccagagccctgtc
cttagagtcatagtagaaaacctcttctaccccgtcacactggaagtcctgcaccagatc
ttctccaagtatgggtctgttctgaagatcatcaccttcactaagaacaaccagttccag
gctctggtccaatatgctgaccccatgacggcacagcacaccaaaatgtctctagacggt
cagaacatctataacggctgctgtactctgagggtgagtttctccaagctgaccagcctc
aacgtgaagtttaacaacgataagagccgtgactacaccagacctgacctttctactgga
gagcaacacaaccctcagcctggaatggaccagcacgcgatggctgctgccgccttcggg
tctccaggtctgatctcagcgtctccttatggacacggattcccccaggccttcactcta
cagcaggctgcaggtctgtctatgcccggtgccttggcgtcattcggtatgggtccaggg
ggcatggccgctactcgtctcggcctgcaagccctcggcggtggcggaggacaagctggc
gtcctattggtcagcaacctcaacccagagagcgttacaccaaactgcctctttattctc
tttggtgtgtatggcgacgtgatgagagttaagattctgttcaataagaaggacaacgct
ctggtccagatggctgatggcacacaggctcagctagcgatgagccacctgaacggggtg
cgtctccatggccggtctctacgtgtctccatgtctaaacacaccaccgtgcagctgccc
agagaaggccatgaggaccaggggttgactaaggactatgccacctctcctctccaccgt
tttaagaagcctggctccaaaaactacaacaacatctaccctccctctggcacactgcac
ctctccaacatacctcctgcagtaggagaggaggatctgaaggcactgttcagcagttca
ggagcttcagtcacggccttcaagttcttccagaaggaccgtaagatggctctgatccag
atgagctcagtggaggaagctgttgagagtctcatcgagttccacaaccatgacctggga
gacaaccaccacctcagagtgtctttctccaaatctaccatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (50)   

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