KEGG   Salmo salar (Atlantic salmon): 100380395
Entry
100380395         CDS       T04363                                 
Symbol
rpb2
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03020  RNA polymerase
sasa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100380395 (rpb2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100380395 (rpb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sasa03021]
    100380395 (rpb2)
   03400 DNA repair and recombination proteins [BR:sasa03400]
    100380395 (rpb2)
Enzymes [BR:sasa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100380395 (rpb2)
Transcription machinery [BR:sasa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100380395 (rpb2)
DNA repair and recombination proteins [BR:sasa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100380395 (rpb2)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100380395
NCBI-ProteinID: NP_001167150
UniProt: C0HA74
Position
ssa09:60200158..60214537
AA seq 1174 aa
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPETDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctattttgatgagaagggcctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtgcagaggatcgtggag
gatgccccgcccattgacctgcaggctgaggcccagcacacctctggagaggtggaggat
ccgccacgctacttgctgaagtttgagcagatctacctttcaaaacccactcactgggaa
agagatggagccccatcgcctatgatgcccaacgaggccagactcaggaaccttacgtac
tctgctccactgtacgtggacatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcattggcaagatcccgatcatgctgcgctccacctac
tgtctgctcagcggcctgacagaccgtgatctgtgtgagctcaacgagtgcccactggac
cccgggggctacttcatcatcaatgggtcagagaaggtcttgatcgcccaggagaagatg
gccacgaacacagtgtacgtcttcgccaagaaggactcaaagtatgcgtacacaggggag
tgccgctcctgcctggaaaactcctcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaggtgcccatcatcatagtgttccgagccctgggctttgtctcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaagccatccctggacgaggcctttgtgatccaggagcagaacgtggcgctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaggagaggaggatcaagtacgccaag
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacagactcctattagcggccctgggcagaaga
gagctggacgacagggatcactatggcaacaagagactagacttggctgggccgctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatctacgcccaa
aagtttattgaccgagggaaagacttcaacctggagttggccatcaagacacgaatcatc
tccgacggcctgaagtactctctggccacggggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgttgaaccgcttgaccttcgcctccaccctctct
caccttcgtcgtgtgaactcccccattggtagggacggcaagctagccaagccccgacag
cttcacaacacgctgtggggcatggtgtgccctgctgagacccctgagggtcatgctgta
ggcctagtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
atcgcggatgccacaaagatctttgtgaatggctgttgggtgggcatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggagacagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacggacgccgggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaggagactgtaatgctggccatgacccctgac
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccacgtgctctactacccccaaaaacccttagtcacc
acccgctctatggagtacctgcgtttcagagagctccctgcaggtatcaactcgattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagaacaggagtcaaag
aaaggctttgatcaggaggaaatctttgaaaaacccacacgtgaaacctgttcgggcatg
aggcacgccatttacgacaagctggacgacgacggcttgatagctcccggcgtgcgtgtc
tccggcgaggacgtcatcatcggcaagacggtgaccctgccggagaccgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttctgcaag
attagggttcgctccgttcgtatcccccagatcggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attactccagacatcatcatcaacccccacgccatcccctctcgtatgacagtcggccat
ttgattgagtgcctgcagggaaaggtttcagccaacaaaggggagattggtgacgccacg
cctttcaacgatgcggtcaacgtgcagaaggtctccaacctgctgtctgaatacggctat
cacctgaggggcaacgaggtgttgtacaacggtttcaccggccgtaagattacctctcag
atcttcctcgggcccacatactaccaacgcctgaagcacatggtggacgacaagatccac
tctcgggcccgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gacggaggtcttcgttttggggagatggagcgcgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtccgacccctaccaggtccacgtctgcaac
ctctgtggcctcatggccatcgccaacacccgcacgcacacctacgagtgcaggggctgt
cgcaacaaaacacagatctccctggtcagaatgccgtacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgtatgatgaccagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (57)   

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