KEGG   Salmo salar (Atlantic salmon): 106567188
Entry
106567188         CDS       T04363                                 
Symbol
pan2
Name
(RefSeq) PAN2 poly(A) specific ribonuclease subunit
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106567188 (pan2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106567188 (pan2)
Enzymes [BR:sasa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     106567188 (pan2)
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106567188 (pan2)
  mRNA degradation factors
   3'-5' decay
    Pan complex
     106567188 (pan2)
SSDB
Motif
Pfam: PAN2_N UCH_1 RNase_T UCH WD40_like
Other DBs
NCBI-GeneID: 106567188
NCBI-ProteinID: XP_013991675
UniProt: A0A1S3LLC1
Position
ssa13:40184083..40202079
AA seq 1195 aa
MMNFDSLDPGMGEYAPALHGNLEPGREPSMDPRLNPGLLQGVELDPDGLPVAIPESVHMM
EGMFSELHSVHAEVGVPVTATHFDLQEELLWMGNHRGHAMSFFGSTMGRYSSFQAHSTDD
IRQIQSMETGVLFLSKSNLKCQTRGGLVMFDYPMEEGADMHSLLMTENNAMLMGGLQNYV
LEFDLNTVQQTQKFTVEAPGVAIMRQSNRFLFCGNTSGKVSLCDLRTFKLEHEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNRLACDRFLMVFDLRMMRTVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGECQFCEPTGLANLADVFHVNTVGQLLMSFDVSSSKQALAFGDSGGGVHLW
SDAPEVSYNSYSRETEFALPCLVDSLPQLDWSHDLLPLSLIPMPLNSSEPLLSDWVTTQA
TPSPRRAPPVDPEILRTMNSVGFIGYAPNPRTRPRNQVPYKIKEVELDYDNYNQGVPESL
IGRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVL
YFLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGL
ILADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSALGSSGESVIGR
QFGCEVENSSLCRCGKETVRSSLTLLFTMHYPEQNSLDKTIKEYDFAEILKKSICLEQST
QAWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSVKEAEFWKAQAEYAFIKAKKKEEMEP
HKPKEPPPQQPTEWCLEEGLVNTEGLTFDTRVEDLRHVWIPLTLKMSISKSQGLEISSWP
EEEELNSTEEAEGASLYDLVVTVPHVLDARTGGNLVAHIKVGETYHVRKEGVTHQQWYLF
NDFLIEPIDKAEAAQFDVNWKVPAILYYAKRNYHSKYDLRIKNPIEASVLLTEASLARKQ
RKSHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCV
RGQGPNDGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLI
DTGVRFVGHGLQKDFRVINLLVLKDQVVDTVYLFHMPRKRMISLRFLAWYFLDLNIQGET
HDSIEDARTALSLYNKYLELSRGGGNNEVRKVLKGLYEKGRKMDWKVPDCDTGDG
NT seq 3588 nt   +upstreamnt  +downstreamnt
atgatgaactttgatagtctggacccaggaatgggtgaatacgcacccgccctccatggg
aatctagagccgggtagggagccctccatggacccacggctcaatccgggtttgttgcaa
ggtgtggagcttgatccagatggtcttcccgtggccatacctgagtctgtgcacatgatg
gaggggatgttctctgagctccacagcgtgcatgcagaggtgggcgttcctgtcacagca
actcactttgacctgcaagaggagctactctggatggggaaccacaggggacatgcgatg
tccttctttggttcgacaatgggccgctactcatctttccaggcgcactcgactgatgac
attcgtcagattcagagcatggagacaggggttctgtttctctctaagagtaatctcaag
tgccaaactcgtggaggcctcgtaatgttcgactacccaatggaggagggagctgacatg
catagtctgcttatgacagaaaacaatgcaatgctcatgggtggactacagaattatgtg
cttgaatttgaccttaatactgtgcagcagacccaaaagttcacagtcgaggctccaggg
gtagctattatgcggcagtccaatcgtttcttattctgtgggaacacatctgggaaggtg
tccctttgtgacctgcgcactttcaagctagaacatgagtttgatgccttctccggtagc
ctgtcagacttcgatgtccatggcaacctcctggctgcatgtgggttctccagtcgaggg
ctgaacagactggcgtgtgaccgcttcctcatggtgtttgacctgcgcatgatgcgcact
gtgacaccactccaggtgcacgtggaccccctcttcttgcgcttcatccctacgtacacg
tcacgcctggccatcatctcacagacaggagagtgtcagttctgtgagcccactggacta
gctaacctggctgacgttttccatgtcaacaccgtgggccagttgctcatgagcttcgac
gtgtcctccagcaagcaggctttggcctttggggactctgggggaggtgtgcacctttgg
tcagacgccccagaggtctcctacaacagctactcgcgggagacagagtttgctctgccc
tgtctggtggactccttgcctcagctagactggagccatgacctgttgcccttgtccctc
atccccatgcctttgaacagctcagaaccactactgtcagactgggtcaccacacaggcc
actcccagccctagacgagcacccccagtggacccagagatcctgcgcactatgaactct
gtagggttcattggttacgcccccaatcctcgcacacgtccccggaaccaggttccttac
aagatcaaggaggtggagctggactatgataactacaaccagggtgttcctgagtctctt
attggtcgagatgaagaaccacacctgtacatggtgcccaagaaatacaggaaggtcacc
atcaaatactccaaacttggcctcgaggactttgacttcaaacattacaacaggaccctg
tttgctggtcttgaacctcacattcccaatgcttactgcaactgcatgattcaggtgttg
tatttcctggagccaatccgctgcctggtccagaaccacctgtgtcagaaggagttctgt
ctggcgtgtgagctgggcttcctcttccacatgctggacctgtcacgaggagacccctgt
caggccagtaatttcctccgagcattccgaacaatcccagaggcatctgccctgggcctt
atcctggctgactctgatgagcagacggggaaggccaggctgggccgtctcatccagagc
tggaaccgcttcattctaacccagctccaccaggagacccaggagcaggaggggccacag
gcctaccgaggagccagcagcagtgctctgggctcctcaggcgagtctgtaatcggaagg
cagtttggatgtgaggttgagaacagcagcctgtgtcgctgtggaaaggagaccgtacgc
tcctctctcaccttgctcttcaccatgcactaccctgagcagaactcacttgataagacg
ataaaggagtatgactttgctgagatcctgaagaagagtatatgtctggagcagagtaca
caggcgtggtgtgagaactgtgaaaagtaccagcccacagtgcagacacggaacatccgc
tgccttcctgatgtactggtcattaactgtgaggtgaacagtgtcaaagaggctgagttc
tggaaggctcaggcagagtacgctttcatcaaggccaagaagaaagaggaaatggaaccc
cataagcccaaagaacctccaccacaacaaccaactgagtggtgcttagaggaggggctg
gtcaatacggagggcctgacctttgacaccagagtggaggacctgcgtcacgtctggatc
cctctcactctgaagatgtccatcagcaaaagccagggcctggagataagcagttggcca
gaggaagaggagctgaactccactgaggaggctgaaggagcgtctctctatgacttggtg
gttactgtgcctcatgtactggacgctcgcaccgggggaaacctggtagcacacatcaaa
gtgggagagacctatcacgtcagaaaagagggggtaacacaccagcagtggtatctattc
aatgacttcctgattgagccaattgacaaggcagaagcagcacagtttgatgtgaactgg
aaggtgcctgccatcttatattacgccaagagaaactaccactccaaatacgacctacgc
attaaaaaccccatcgaggccagtgtgctgctgacagaggcatcactggcgaggaagcag
aggaagagccacgccacgttcatccccctcatggtcagtgagatgccccaggccggagac
ctcgtgggactggacgctgagtttgtcaccctcaaccaggaggaggcagagctacgcagt
gacggcaccaaatccaccattaagcccagtcagatgtctgtggcacggatcacctgtgtg
cgcggtcagggtcccaacgatggagtaccattcatcgatgactacatctccactcaggag
caggtggtggactatctgacccagtactcaggcatcaaaccaggggacctagatgctaag
atttcctccaagcacttgaccactctgaagtcaacttacctgaagctgcgcttcctcatt
gacaccggagtgcgctttgttggccatggtttacaaaaggacttccgcgttataaatttg
ctggtgctgaaggatcaggtagttgacacagtctacctgttccatatgcctcgtaagagg
atgatctctctgcgctttctcgcctggtacttcctggacctgaacatccagggtgagaca
catgacagtatcgaggatgcacgcaccgcactttctctgtacaataagtacctggaactg
agtcgtggaggaggaaacaatgaagtccgcaaagttctgaagggactctacgagaaaggc
cgcaagatggactggaaagtcccggactgtgacacaggagatggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

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