KEGG   Staphylococcus aureus M1 (MRSA): BN843_5360
Entry
BN843_5360        CDS       T02618                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
saum  Staphylococcus aureus M1 (MRSA)
Pathway
saum03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:saum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BN843_5360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:saum03021]
    BN843_5360
   03400 DNA repair and recombination proteins [BR:saum03400]
    BN843_5360
Enzymes [BR:saum01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BN843_5360
Transcription machinery [BR:saum03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BN843_5360
DNA repair and recombination proteins [BR:saum03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BN843_5360
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: CCW20870
Position
585683..589306
AA seq 1207 aa
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIKDLLE
EIDLDEELKLLRDELESATGQRLTRAIKRLEVVESFRNSGNKPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNNTNEVLKAYANGFVHLHTRIGVH
ASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQENLERKTPNRYFIDPTT
LGEGGLKEYFENEELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVADIVVLPDKQQILDEHEKLVDRITKQFNRGLITEEERYNAVVEIWTDAKDQIQGEL
MQSLDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITPEIAKKITDAGIEQMYIRSAFTCNARH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRIIVEIGQ
PVQRGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKHRKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYEKTAKPVAEVE
SQTEVTE
NT seq 3624 nt   +upstreamnt  +downstreamnt
ttgattgatgtaaataatttccattatatgaaaataggattggcttcacctgaaaaaatc
cgttcttggtcttttggtgaagttaaaaaacctgaaacaatcaactaccgtacattaaaa
cctgaaaaagatggtctattctgtgaaagaattttcggacctacaaaagactgggaatgt
agttgtggtaaatacaaacgtgttcgctacaaaggcatggtctgtgacagatgtggagtt
gaagtaactaaatctaaagtacgtcgtgaaagaatgggtcacattgaacttgctgctcca
gtttctcacatttggtatttcaaaggtataccaagtcgtatgggattattacttgacatg
tcaccaagagcattagaagaagttatttactttgcttcttatgttgttgtagatccaggt
ccaactggtttagaaaagaaaactttattatctgaagctgaattcagagattattatgat
aaatacccaggtcaattcgttgcaaaaatgggtgcagaaggtattaaagatttacttgaa
gagattgatcttgacgaagaacttaaattgttacgcgatgagttggaatcagctactggt
caaagacttactcgtgcaattaaacgtttagaagttgttgaatcattccgtaattcaggt
aacaaaccttcatggatgattttagatgtacttccaatcatcccaccagaaattcgtcca
atggttcaattagatggtggacgatttgcaacaagtgacttaaacgacttataccgtcgt
gtaattaatcgaaataatcgtttgaaacgtttattagatttaggtgcacctggtatcatc
gttcaaaacgaaaaacgtatgttacaagaagccgttgacgctttaattgataatggtcgt
cgtggtcgtccagttactggcccaggtaaccgtccattaaaatctttatctcatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcagga
cgttcagttattgcagtaggtccaagcttgaaaatgtaccaatgtggtttaccaaaagaa
atggcacttgaactatttaaaccattcgtaatgaaagaattagttcaacgtgaaattgca
actaacattaaaaatgcgaagagtaaaatcgaacgtatggatgatgaagtttgggacgta
ttggaagaagtaattagagaacatcctgtattacttaaccgtgcaccaacacttcataga
cttggtattcaagcatttgaaccaactttagttgaaggtcgtgcgattcgtctacatcca
cttgtaacaacagcttataacgctgactttgacggtgaccaaatggcggttcacgttcct
ttatcaaaagaggcacaagctgaagcaagaatgttgatgttagcagcacaaaacatcttg
aaccctaaagatggtaaacctgtagttacaccatcacaagatatggtacttggtaactat
taccttactttagaaagaaaagatgcagtaaatacaggcgcaatctttaataatacaaat
gaagtattaaaagcatatgcaaatggctttgtacatttacacactagaattggtgtacat
gcaagttcgttcaataatccaacatttactgaagaacaaaacaaaaagattcttgctacg
tcagtaggtaaaattatattcaatgaaatcattccagattcatttgcttatattaatgaa
cctacgcaagaaaacttagaaagaaagacaccaaacagatatttcatcgatcctacaact
ttaggtgaaggtggattaaaagaatactttgaaaatgaagaattaattgaacctttcaac
aaaaaattcttaggtaatattattgcagaagtattcaacagatttagcatcactgataca
tcaatgatgttagaccgtatgaaagacttaggattcaaattctcatctaaagctggtatt
acagtaggtgttgctgatatcgtagtattacctgataagcaacaaatacttgatgagcat
gaaaaattagtcgacagaattacaaaacaattcaaccgtggtttaatcactgaagaagaa
agatataatgcagttgttgaaatttggacagatgcaaaagatcaaattcaaggtgaattg
atgcaatcacttgataaaactaacccaatcttcatgatgagtgattcaggtgcccgtggt
aacgcatctaactttacacagttagcaggtatgcgtggattgatggccgcaccatctggt
aagattatcgaattaccaatcacatcttcattccgtgaaggtttaacagtacttgaatac
ttcatctcaactcacggtgcacgtaaaggtcttgccgatacagcacttaaaacagctgac
tcaggatatcttactcgtcgtcttgttgacgtggcacaagatgttattgttcgtgaagaa
gactgtggtactgatagaggtttattagtttctgatattaaagaaggtacagaaatgatt
gaaccatttatcgaacgtattgaaggtcgttattctaaagaaacaattcgtcatcctgaa
actgatgaaataatcattcgtcctgatgaattaattacacctgaaattgctaagaaaatt
acagatgctggtattgaacaaatgtatattcgctcagcatttacttgtaacgcacgacat
ggtgtttgtgaaaaatgttacggtaaaaaccttgctactggtgaaaaagttgaagttggt
gaagcagttggtacaattgcagcccaatctatcggtgaaccaggtacacagcttacaatg
cgtacattccatacaggtggggtagcaggtagcgatatcacacaaggtcttcctcgtatt
caagagattttcgaagcacgtaaccctaaaggtcaagcggtaattacggaaatcgaaggt
gtcgtagaagatattaaattagcaaaagatagacaacaagaaattgttgttaaaggtgct
aatgaaacaagatcataccttgcttcaggtacttcaagaattattgtagaaatcggtcaa
ccagttcaacgtggtgaagtattaactgaaggttctattgaacctaagaattacttatct
gttgctggattaaacgcgactgaaagctacttattaaaagaagtacaaaaagtttaccgt
atgcaaggtgtagaaatcgacgataaacacgttgaggttatggttcgacaaatgttacgt
aaagttagaattatcgaagcaggtgatacgaagttattaccaggttcattagttgatatt
cataactttacagatgcaaatagagaagcatttaaacaccgtaagcgtcctgcaacagct
aaaccagtattacttggtattactaaagcatcacttgaaacagaaagtttcttatctgca
gcatcattccaagaaacaacaagagttcttacagatgcagcaattaaaggtaagcgtgat
gacttattaggtcttaaagaaaacgtaattattggtaagttaattccagctggtactggt
atgagacgttatagcgacgtaaaatacgaaaaaacagctaaaccagttgcagaagttgaa
tctcaaactgaagtaacggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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