KEGG   Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA): SAV1275
Entry
SAV1275           CDS       T00052                                 
Name
(GenBank) similar to metallo-beta-lactamase family protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sav  Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)
Pathway
sav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAV1275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sav03019]
    SAV1275
Messenger RNA biogenesis [BR:sav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SAV1275
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 vATP-synt_E HTH_10
Other DBs
NCBI-ProteinID: BAB57437
UniProt: Q99UJ7
Position
1345104..1346777
AA seq 557 aa
MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDIS
YVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVR
YYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPD
IKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIR
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIA
TGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIP
NNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEK
GDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLL
FESTKRRPMIIPVISEI
NT seq 1674 nt   +upstreamnt  +downstreamnt
ttgagtttaataaagaaaaagaataaagatattcgcattataccattaggcggtgttggc
gaaattgctaaaaatatgtatatcgttgaagtagacgatgaaatgtttatgttagatgct
ggacttatgtttccagaagacgaaatgctaggtattgatattgttataccagacatttca
tacgtacttgaaaataaagataaattgaagggtatattccttacacacggacatgagcac
gcgattggtgcagtgagttatgttttagaacaattagatgcaccagtatatggatctaaa
ttgacaatagcgttaattaaagaaaatatgaaagcccgtaatattgataaaaaagttcgc
tactacacagttaacaatgattcaattatgagattcaaaaacgtgaatattagtttcttt
aatacgacacacagtattcctgatagtttaggtgtttgtattcacacttcatatggtgcc
attgtgtatacaggtgaatttaagtttgaccaaagtttacatggacattatgcaccagat
attaaacgtatggcagagattggtgaagaaggcgtatttgtcttaatcagtgattctact
gaggcagagaaacctggatataatactccggaaaatgtaattgaacatcatatgtatgat
gcttttgcaaaagtgcgaggtcgcttgattgtttcatgttatgcttcgaactttatacgt
attcagcaagttttaaatattgctagcaagctaaatcgtaaagtgtcatttttaggaaga
tcacttgaaagttcatttaatattgctcgtaaaatggggtatttcgacattcctaaagat
ttgctaattcctataacagaagttgataattatcctaaaaatgaagtgataattatagct
actggtatgcaaggagaacctgtagaagccttaagtcaaatggcgcaacataagcataaa
attatgaatatcgaagaaggcgattctgtatttttagcaattacggcttctgctaatatg
gaagttatcattgcgaatacattaaatgagcttgtacgtgctggcgcacatattattcca
aataacaagaagattcatgcttcaagtcatggttgcatggaagaattaaaaatgatgatt
aatattatgaaacctgaatactttattcctgtacaaggtgaatttaaaatgcagatagca
catgcgaagctagcagctgaagcaggtgttgcaccggaaaagattttccttgtggaaaaa
ggagatgtcattaattacaacggtaaagatatgatattaaatgaaaaggtaaattcggga
aatattttaatagatggtattggtattggggatgtaggaaatatcgtgttgagagaccgt
catcttttagcagaagatggtatctttattgctgtagtaacgttagatcctaaaaataga
cgtatagctgcgggtcctgaaattcaatctcgtgggtttgtatatgtacgtgaaagtgaa
gacttattacgtgaagcagaagagaaagtacgtgaaatagtagaagctggtttacaagaa
aaacgcatagaatggtctgaaattaagcaaaatatgcgtgatcaaattagtaaactatta
ttcgaaagtacaaaacgtcgtcctatgattattccagtaatttctgaaatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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