KEGG   Sorghum bicolor (sorghum): 8069982
Entry
8069982           CDS       T01086                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    8069982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbi03021]
    8069982
Enzymes [BR:sbi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     8069982
Transcription machinery [BR:sbi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     8069982
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 8069982
NCBI-ProteinID: XP_021314138
Position
4:complement(3604356..3618611)
AA seq 2015 aa
MEEDHSATLVSEGAIKSIKLSLSTGEEVCTYSVNECPVTHPSQLGNPFLGLPLEAGKCES
CGASENDKCEGHFGYIELPVPIFHPCHVSELRQLLSLICLKCLRIKKGKVKQSNGKGNLS
ATLCSYCRDIPALSVKEVKTADGAIRLELSAPHKRHMTERSWNFLDKYGFHHGGCSQFRS
LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SIALLKKVLQKIEQIKRSRSGSPNFDSHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT
VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE
QVTDININRLQEVVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN
RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF
SVERQLISSHSGKVNLQLGNDCLVAMKAMSDRTVLHKELANQLAMFVPFSLLAPAVMKPI
PSWTITQIVQGALPAKLTCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPRE
ALQFLNVLEPLLMEFLVLGGLSISLRDFNVPKALLEEAQKNIQNQSLVLEQSRCSTSQFV
ELRVENNLKSVKQQISDYVGKFSGLGLLIDPKKEASMAKVVQQVGFVGLQLYREGKLYSR
RLVEDCFSSFVNKHSAIGDEYSPEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGL
SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPGEPVGVLA
ATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDAKDRKVVLFLSDCSCAKKFCK
ERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGQLERINIS
IQDILQKCQEVSGRYGKKKGHLCHLLKKITFATCDCSFTQMPISGKLHKVPCVQFSFSDE
STVLSESVERAVNVIADSVCSVLLDTIIKGDPRIQAAKVIWVESDATAWVKNTRKVSKGE
PALEIIVEKDHAVSNGDAWRTTIDACLPVLDLIDTRRSIPYGIQQVKELIGISCAFDQVV
QRLSSTVKMVNKGVLKDHLILVANSMTCTGSLIGFNIAGYKATFRSLKVQVPFTESTLFT
PMKCFEKAAEKCDSDSLGCVVSSSSWGKHAAVGTGSSFQILWNENQLKSNKDYGDGLYDF
LALVRTDQEKTGYMFLDDVDYLLEENAIDDMCLSPEPDGTVGKPTFEDNFEEQNIQKGSS
WENGITMKSSWEQDASAANDSGDWGGWSSGGGASAKPADQDNSWEVHAKVQDNSTDWGGW
SSGVGAAAKPADQDNSWEVHAKAQDNCTDWGGWSTDKPTGEATVSGQPAEMDTWADKGTK
MESGAGDANWEKKSSTPEASNKNDPWGKSENTWDKRKGDGGDGGDGAWEKKSVDGHGNWD
HPGNWNGQSLNVDQDTWGNARGKKKADGNCQWEEQPSTYRRKKTNADHNSSYNNVMPSSD
NAWNAGERFGRSNAKSNAGSSWGEKDKMESDEHPKVPKESDTWNTGKSNESPWDNTDALQ
DSWGVNSATHDNNTEDGSWDKVVAIKDPVSQQDSWSNVAIQKNDAQNDSWDNVAEKALNS
ASQDSWGHLAATPVSNSDAKQSDSWDGWNAVPAENSQGTAQWKERTDSGNKDWKSDGWGA
KSGNWSSQRNNPGRPPRRPDERGPPPPRQRFELTIEEKKILLEVEPLIFRVRRIFREACD
GVRLKPEDEKFIQEKILEHHPEKQSKVSSEIDHIMVNKHHTFEDTRCFFVVSTDGSQADF
SYLKCLENFVRKNYTEDVDSFCMKYLRPRRRQAPPPDVGTAPGTPAEVPPSTAAETEQGT
PAPPAEVPQETLGSPAVALEGTHNPRTDPTDDTELLGKDSDLTPASPAVAPQEAPKPDPT
DDTELLGNEKPDLTPSSPGEALQATADPDSTLTDI
NT seq 6048 nt   +upstreamnt  +downstreamnt
atggaggaggatcactcagcgacactagtctctgaaggtgctattaaaagcatcaaactt
agcctctctaccggagaagaagtatgcacttactccgtaaatgagtgcccagtgacccac
cctagccagcttggaaatccattccttgggttgccccttgaagctgggaaatgtgaatca
tgtggggcgtctgaaaatgacaaatgcgaagggcattttgggtacattgagctacctgta
cccatattccatccctgccatgtcagtgaactgaggcaactattgagcttgatatgtctg
aaatgccttcgaatcaagaaagggaaggtgaagcaaagtaatggaaaaggaaatttgtca
gcaacattgtgctcttattgccgggatattccagctctgtctgtcaaggaagtcaagaca
gcagatggtgcgattcgattagagttgagcgcacctcataagagacacatgacagaacgt
tcatggaactttcttgataaatatggatttcatcatggtggatgttctcaatttaggtca
ctgcttccagaagaggctctgaatatattgaagaaggttcctgatgatactaggagaaag
ctagctgcacgtggatacattgttcagactgggtatgtgatgaagtaccttccagtacct
ccgaactgtctatatattccagagttcaccgacgggcagagcatcatgtcatatgacatt
tcaatagctttgttgaagaaggttcttcagaaaatagaacaaatcaaaagatcaagatct
ggttcaccaaacttcgattcacatgatgctgaatcatgcgatttgcagcttgcgattggc
cagtacatacgtctaaggggcactacaaggggccctcaagacaacaccaagcggtttact
gttggcagtgctgattcagctgcattgtcaacaaaacagtggttagaaaagatgcggaca
ctgtttatcagcaaagggtcaggtttttcatctcgcagcgttctgacaggtgacccatac
attgggttaggtgtagtagggcttccttctgaagtagctaagcggatgacctttgaagaa
caggtcacggacataaacattaacagactgcaggaggtggtagacaagggactctgcttg
acctacagagatggtcaagcaacttatgctataactgttggatcaaaagggcacacaaca
cttaaagttggtcaaactatcagtaggagaattgttgatggggatgttgtgttcctcaat
aggccgcccagcacacataagcattctcttcaagctttctacgcatatgtgcatgatgat
catacagtaaaaatcaatcctctcatgtgcggccccttttctgctgacttcgatggtgat
tgtgtgcatatatattatccgcaatcgcttgctgcaaaagctgaagccttggagcttttt
agtgttgaaagacaactaatcagttcccacagtgggaaggttaacctccagctaggtaac
gactgtttggtagctatgaaggctatgtctgacagaacagtgttacacaaggaactagca
aaccagctggcaatgtttgtgccattctcacttctggcccctgctgtaatgaagccaatt
ccgtcttggacaatcacacagatagtgcaaggtgcattaccagctaaattgacttgccaa
ggggacacacacttggttagggacagcacaatcataaagctggatcttgacaaagaatct
gttcaggactcattcccagatttggtgtcctccatccttcgtgagaagggtccaagagag
gctctgcaatttctgaatgtgctggagccattgttgatggagtttttagttctcggcggt
ttgagtataagtctgcgggattttaatgttcccaaggctctattggaggaagcacaaaag
aacattcagaatcagtcccttgttcttgagcagtcaaggtgttctacgagtcaattcgta
gaattacgagtcgaaaacaatttaaaaagtgtcaaacagcagatttcagattatgttggg
aaattctctggccttgggttgcttattgatccaaaaaaggaagcctcaatggcaaaagta
gtacaacaagttggttttgttggcttgcaactgtaccgtgaaggtaaattgtactcgagg
cgcttggtagaggactgcttttcaagctttgtgaataaacactcagccattggagatgag
tattcaccagaagcttttggtctggtgcaaagttcatattttcatggtctgaatccgtat
gaagaactggtgcatgctatatgtactagagaaactatgatccgctcctctagagggctg
tcagaacctggaactttgtttaagaatttaatggccatcttgagggatgtagttatatgt
tatgatggaactgtgagaaacatttgtagcaattccatcattcaacttaagtatggggaa
gatgatgaagctgattcttcaagtgctgtacctcctggtgaacctgtgggtgtcttagct
gccacagctatctcaaaccctgcatacaaggccgtcttggattcctcccaaagtaacaat
gcttcttgggagtcaatgaaggaaattcttcagacaagaacttcatataaaaatgatgca
aaagataggaaagttgtcctgttcctgagtgactgctcttgtgctaagaagttctgcaag
gaaagggctgcacttgcagtacagagttgtcttaagagagtcacacttggggattgtgct
actgatatctgcattgagcatcagaagcaaataaatttagatggaacatctgaagctgcc
ccaactcttgtaggccatattcatctggacaagggacaattagaaagaataaacattagt
attcaagacattctccaaaaatgccaagaagtttctgggagatatggaaagaagaaagga
cacctttgccacctcttaaaaaaaattacttttgctacttgtgattgttcattcactcag
atgccaatcagtggaaagctacataaggttccatgtgtgcagttctctttctccgatgaa
agcactgtattatctgagtctgttgagagagcggtgaatgtgatagctgactctgtctgc
tcagtgctattagatacaattattaaaggtgatcctcgaattcaagcggcaaaagttatc
tgggttgaatcagatgcaaccgcttgggtaaagaacacacggaaggtatcaaagggtgag
ccggcgttggaaatcattgttgaaaaagatcatgctgttagcaatggtgatgcctggaga
acaacaattgatgcctgcttacctgtacttgacctcattgacacgcggaggtctattcca
tatggcattcagcaagtgaaggaacttattggcatctcatgtgccttcgatcaagttgtg
cagcggctttcatcgactgtaaaaatggttaataaaggagttctcaaggaccatttgata
cttgtggcaaacagcatgacgtgcactggaagtttgattgggttcaacattgctggctac
aaggcaactttccgttcgttaaaagttcaagtgccgtttaccgagtccactttgtttacc
cctatgaaatgctttgagaaggctgccgaaaaatgtgattctgattcattgggatgtgtg
gtctcatcatcttcatggggcaagcatgcagcagttggtactgggtcatcttttcaaatt
ctctggaatgaaaatcagctgaaaagcaacaaggactatggtgatgggctgtatgatttc
ttagcgttggtcagaaccgaccaagaaaagacaggttacatgttcttggatgatgttgac
taccttctagaagagaatgcaatagatgacatgtgcttatctcctgagcctgatgggacc
gttggtaagcccacctttgaggataatttcgaagagcaaaatattcagaaaggcagctca
tgggaaaatggcataacaatgaagtcaagttgggaacaagatgctagtgctgcgaatgat
tctggtgactggggaggctggagtagtggaggtggagcttctgcaaagccagcagatcaa
gataattcatgggaagtgcatgctaaggtgcaggacaattccactgattggggaggctgg
agtagtggagttggagctgccgcaaagccagcagatcaagataattcatgggaagtgcat
gctaaggcgcaggacaattgcactgattggggaggctggagcactgataagccaacaggc
gaggcaactgtatctggacaaccagctgaaatggatacttgggctgataagggcactaaa
atggaatcaggtgcaggtgatgctaattgggagaagaagtccagcactcctgaggcatca
aataaaaatgacccatggggcaaatcagaaaatacatgggacaaaagaaaaggagatgga
ggagatggaggtgatggtgcctgggagaagaagtctgttgatggccatggcaattgggat
catcctggcaactggaatgggcagagtttgaatgtagatcaggacacgtggggaaatgcc
aggggcaaaaagaaggcagatggtaactgtcaatgggaggagcagccaagcacttacaga
cggaagaagacaaatgctgatcataattcctcctataataatgtgatgccatcatcagac
aatgcttggaatgctggagagcgatttggaagatcaaatgccaagtctaatgcaggatcc
agttggggtgagaaagataagatggagtctgatgagcatccgaaagtcccaaaagaatca
gacacatggaatacagggaaatcaaatgaaagtccatgggataacactgatgcactacag
gattcctggggtgttaacagtgcaactcacgataacaacactgaggatggttcatgggac
aaagtagtagccataaaggatcctgtttcacagcaagattcatggagtaatgtggcaatc
cagaagaatgatgcacagaatgattcttgggacaatgtagcagaaaaggccctgaattct
gcctctcaagactcctggggtcatctggctgcaacaccagtgagcaattcagatgctaag
caatcagattcttgggatggctggaatgctgtgcctgctgagaactcacaaggtactgct
caatggaaagagagaactgattctggtaacaaggactggaaatcagatggatggggtgcc
aaatctggtaactggagcagccaaagaaataatccggggagacccccaaggaggccagat
gagaggggtccacccccaccaagacaacggtttgaactaacaatagaggagaagaaaatt
cttctagaagttgaaccccttatattccgtgtgagaagaatcttccgtgaagcatgtgat
ggtgtgagacttaagccagaagatgaaaagtttatccaggagaaaattctcgagcaccac
ccggaaaagcaatccaaagtgtctagtgaaattgaccatataatggtcaacaagcatcat
actttcgaggacactcgatgctttttcgtggtctccacagatggatcccaagcagatttc
tcctacttgaagtgcctggagaattttgtgaggaagaactacacggaggatgttgactca
ttctgcatgaaatacttaaggcctcgtcgcaggcaagcaccaccaccagatgttgggaca
gcaccaggcactccggctgaggttccaccatctaccgcagctgagaccgagcaaggcact
ccagcccctccagcagaggttccacaagagactctgggttctcctgcagtggctctagaa
ggaactcacaatcccaggacagacccaaccgacgataccgagcttctaggaaaggattct
gatctgactccagcttcaccagctgtggcaccgcaagaggctcccaagccagacccaacc
gatgatactgagcttctaggaaatgagaagcctgatctgactccatcttctccaggtgag
gctctgcaagcgactgcggacccagattcgacgctgactgatatttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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