KEGG   Shewanella bicestrii: CF168_15565
Entry
CF168_15565       CDS       T05197                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
sbj  Shewanella bicestrii
Pathway
sbj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CF168_15565 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbj03019]
    CF168_15565 (pnp)
   03016 Transfer RNA biogenesis [BR:sbj03016]
    CF168_15565 (pnp)
Enzymes [BR:sbj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     CF168_15565 (pnp)
Messenger RNA biogenesis [BR:sbj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CF168_15565 (pnp)
Transfer RNA biogenesis [BR:sbj03016]
 Prokaryotic type
  tRNA degradation factors
   CF168_15565 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase S1 RNase_PH_C KH_1 KH_2 S1_2
Other DBs
NCBI-ProteinID: ASK70158
UniProt: A0A220UPP3
Position
complement(3563698..3565797)
AA seq 699 aa
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAG
TESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA
LVAQVKELAEDGLAQAYQIQVKQDRYAQVAVVKAAAKEALLAANPDVDLREVDGLLGSLE
KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEPAAE
NT seq 2100 nt   +upstreamnt  +downstreamnt
gtgaatccaattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gttattgcacgtcaagcagacgctgccgttttagctagcatgggtgacacgacagtgttg
gtcactgttgttggtaaaaaagaagctgaagcaggccgtgacttctttcctctgactgtt
aactatcaagaaaagacctacgcagcaggtaaaattcctggtggtttctttaagcgtgaa
ggccgtccttcagaagatgagacattaatcgctcgcctgatcgaccgtccaattcgtcct
cttttccctaatggcttcacaaacgaagttcaagtgatcattactgttgtatctgtcgat
ccacaaatcgagccggatattatttcaatgatcggtacttcggctgcgcttgctatttcg
ggtatcccattcagcggcccattaggtgcagcgcgcgtgggttacatcaatggcgaatac
gtactgaacccaactgtgactcagttagaaagcagccaactgaacctagttgttgccggt
actgagagcgcggtattgatggttgagtcagaagctcaagcattaccagaagaagtgatg
ttaggctcagtggtttatggccatgatcaacaacaagtggttatcaaagcgattgctgaa
ttcaaagccgaagcgggtaaaccagcttggaattggactgcaccagttgccaatgaagcc
ttagttgctcaagttaaagaattggctgaagacggtttagcgcaagcgtatcaaattcaa
gttaaacaagatcgttatgctcaagttgctgtggttaaagccgcggctaaagaagcactg
ttggctgcaaacccagacgtcgatttacgtgaagttgatggtctgctcggtagcttagag
aagaaagtagttcgtggtcgcatcatccgtggtgagccgcgtatcgatggtcgtgagcca
gatatgattcgcgcattaagcgtattggcaggcgtattaccacgtactcacggtagtgca
ctgtttacccgtggcgaaacccaagcgctggtgacttgtactttaggtactgagcgtgac
gcacagaagattgatagcattatgggcgagcgtactagccgcttcatgctgcactacaac
ttccctccttattctgttggtgagacaggtatggtgggttcacctaagcgtcgtgaaatc
ggccacggcaagttagcatggcgcggtatcaacgcagtaatgccttctgctgaagagttc
ccatacagtgtacgtgtggtttctgaaatcactgaatctaacggttcaagctctatggca
tcagtctgtggtacgtctcttgcgctgatggatgcgggtgtgcctatcaagacttctgta
gcgggtatcgctatgggtctagtgaaagaaggcgatgactttgtggttctgtctgacatc
ttaggtgatgaagaccacttaggtgacatggacttcaaagtagccggtacccgtgacggt
gtgactgcactgcagatggatattaagatcgaaggtattaccaaagaaatcatggaaatt
gcactgcaacaagcctatggcgcacgtgtacatatcctaaacgtgatggatcaagcgatt
ggttcgcaccgtgatgatatctctgaccatgctccacgtatcacaactatcaagatcaac
ccagagaagatccgtgatgttatcggtaaaggcggcgcggtaattcgtgcactgactgaa
gaaaccggcactactatcgagcttgaagatgacggtacagtaagaattgcttcttctaat
ggtgaagccaccaaagaagctatccgtcgtatcgaagaaatcacttcagaagttgaagtg
ggtcgtatctacaacggtaaagttatccgtatcgttgacttcggtgccttcgttaacatt
ctgccaggtaaagatggtttagtgcacatttcgcaaatcagcgatgagcgtgttgctaac
gtctctgaccaccttgaacttaaccaagaagtcaccgttaaagtgatggaagtggatcgt
caaggccgtgtaagactgtcaatcaaagaagcacagactaaagagccagctgctgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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