KEGG   Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101047236
Entry
101047236         CDS       T04350                                 
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Brite
KEGG Orthology (KO) [BR:sbq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sbq03016]
    101047236
Enzymes [BR:sbq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     101047236
Transfer RNA biogenesis [BR:sbq03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    101047236
 Prokaryotic type
   tRNA splicing ligases
    101047236
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-GeneID: 101047236
NCBI-ProteinID: XP_010329054
Position
Unknown
AA seq 505 aa
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGIPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVCLLRTNLDESDVQPMKEQLSQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLEAGNHYAEIQVADEIFNE
YAAKKMGIDHKGQACVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACAQIAS
PEGQDYLKGMAAAGNYAWVNRFSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRTFPPHHPLIAVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALCRAKSRPNLDFQDVLDKLTDMGIAIRVASPKLVMEEAPESYKNETD
VVNTCHDAGISKKVIKLRPVAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagtcgcaactataatgatgagctgcagttcttggaaaaaatcaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggcgttttctatgtgaatgat
gctctggaaaaactgatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaatgtggcagccctgcctggaattgttcat
cgatctattgggattcctgatgtccattcaggatatgggtttgccattggaaatatggca
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcgggtttgacatc
aactgtggtgtctgcttgctaagaaccaatttagatgaaagtgatgtccagcctatgaag
gagcaactttcccaagctatgtttgaccacattcctgttggggtaggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggggtggactggtcctta
agagaagggtatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaataaggtctctccaagggctaagaaaagaggccttcctcagttgggg
accctggaagcaggcaaccattatgcagaaatccaggttgcggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgaccataagggacaggcatgtgtgatgatccacagt
ggaagcagaggcctgggccaccaagtagccacagatgctttggtagctatggagaaggcc
atgaagagagacaagattatagtcaatgatcggcagttggcctgtgctcaaatcgcttcc
ccagagggtcaagactacctgaagggaatggcagcagctgggaactatgcctgggtcaac
cgcttttccatgaccttcttaacccggcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctccacgtgatctatgatgtttcgcacaacattgccaaagtggagcag
catgtggtggatggaaaggaacggacactgttggtacacaggaagggatccacccgcaca
ttcccacctcaccatccactcattgctgttgattaccaactcactggacaaccagtgctc
gtcggtggcaccatgggaacctgtagttatgttcttactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtgccgagcaaaatctcga
cctaatttagatttccaggatgtcttagacaaattgacagatatgggaattgcaatccgt
gttgcttcacccaaactggttatggaagaggctcctgagtcctataagaatgagacagat
gtggtgaatacctgccatgatgctggaatcagcaagaaagtcattaaactgagaccagtt
gctgtgatcaaaggatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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