KEGG   Sphaerochaeta globosa: SpiBuddy_1702
Entry
SpiBuddy_1702     CDS       T01439                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sbu  Sphaerochaeta globosa
Pathway
sbu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SpiBuddy_1702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbu03019]
    SpiBuddy_1702
   03400 DNA repair and recombination proteins [BR:sbu03400]
    SpiBuddy_1702
Enzymes [BR:sbu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SpiBuddy_1702
Messenger RNA biogenesis [BR:sbu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SpiBuddy_1702
DNA repair and recombination proteins [BR:sbu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SpiBuddy_1702
SSDB
Motif
Pfam: DEAD Helicase_C ResIII RecQ_Zn_bind AAA_22 SNF2-rel_dom T4SS-DNA_transf
Other DBs
NCBI-ProteinID: ADY13527
UniProt: F0RZH5
Position
1854247..1855767
AA seq 506 aa
MELDHTIKDLASTVFGIQMLRPFQSVVIQRILELDAQNVNHKGLLVTLPTGSGKSLCFML
PSLLVEGLTVIVYPLRSLMNDQVRRFTKLGIACIAIQGGQSREQRKALFSLLDDHRCKVV
ITNAECLSQQAVFCELAHHTISLLVVDEAHTIVRWGEGFRPVFASLAPLLAFLPIKQILC
FTATADQAVIQGLNDLIFTRGKPHLVRCSSDRPNISYHVFRTLSKDHTLAALLAQKNFRP
ALVFCNTRESTLFACNALQRTHPQIPCRYYHAGLDSNQRKALESWFGNQQEGVLFSTNAF
GMGVDKSNIRTVIHRELPDDALSYLQESGRGGRDGRQSRAFILLDGTEKGKLTQLFFSVD
ACYRESLLAELGESLDFCNGCDVCSHTVDAKRQGEDALLGSIAWHPLRYSPSSLSTLLTS
QAAYNSFSKTLSSWRQKEIRSALLLLLSEGKVCMTRRSRRLYLPCKTYVTLLTAHHFYKK
LTYGTKENRACTTADLPDHAPSIPAD
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggagttggatcacaccatcaaagatcttgcgtcaacggtcttcggcatacaaatgctc
agaccgtttcaatcggttgtcatccaacgcattcttgagctcgatgcacagaatgtgaac
cacaaagggcttttggtaaccctgcccaccggcagcggcaaaagcttgtgcttcatgctc
ccttccttgctagtcgaaggcctgactgtcatcgtctaccctttacgctccttgatgaac
gaccaagtaaggcggtttaccaagctggggatcgcatgcatcgccatccagggagggcaa
tcgagggagcagagaaaagcattgttctcccttctggacgaccaccgctgcaaagtggtc
atcaccaatgcagaatgcttgagccaacaggcagtcttttgtgaacttgcccatcatacc
atcagtctgttggtagtcgatgaagcccataccattgttcgctggggggagggcttcaga
cctgtttttgcatccctcgctcccttgctcgccttcctgcccatcaaacaaatcctttgc
tttacggcaacagccgaccaggcagtcatccaaggtctgaatgatctcatattcaccagg
ggcaaacctcatctggtacgctgtagcagtgaccggccgaatatcagctaccatgttttt
cgtacactgagcaaagaccataccttggcagctctgcttgcacaaaagaacttccgtcca
gcacttgttttctgcaatacgcgcgaaagcacgctctttgcctgcaacgccttgcaaaga
acccatcctcaaatcccttgcaggtactatcatgcaggcttggattccaaccaacgcaaa
gccttggaaagctggtttggaaaccagcaggaaggcgtcctcttttcaaccaacgcgttc
ggtatgggagtggacaagagcaacatcaggacagtcatccaccgagagcttccagacgat
gccctctcctatttgcaggaaagcggccgtggtggacgcgatgggaggcaaagcagggct
ttcatcctcctcgacggcacagaaaaaggaaaacttacccaactcttcttttcagtggat
gcatgttatcgggagagtctgcttgcagaactcggtgagtcactggatttctgcaacggt
tgtgatgtatgtagccataccgtagatgcaaaacgacaaggagaggatgcactgcttggc
agtattgcctggcatccattgcgctacagtcccagttctctctctacgctgcttacatcc
caagcagcctacaacagcttctccaaaacactttcttcgtggaggcagaaggagatacgc
tcagctttgcttttgctgctttcagagggaaaggtgtgcatgaccaggcgctctagacgc
ctgtatcttccctgcaaaacgtatgtgacactcttgacagcacatcacttctataaaaaa
cttacgtatggaacgaaagaaaaccgagcatgtaccacagcagacctaccagaccatgcc
ccgtccattcctgccgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system