KEGG   Candidatus Tachikawaea gelatinosa: TGUWTKB_3710
Entry
TGUWTKB_3710      CDS       T03624                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sbw  Candidatus Tachikawaea gelatinosa
Pathway
sbw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sbw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TGUWTKB_3710 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbw03021]
    TGUWTKB_3710 (rpoB)
   03400 DNA repair and recombination proteins [BR:sbw03400]
    TGUWTKB_3710 (rpoB)
Enzymes [BR:sbw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TGUWTKB_3710 (rpoB)
Transcription machinery [BR:sbw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TGUWTKB_3710 (rpoB)
DNA repair and recombination proteins [BR:sbw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TGUWTKB_3710 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: BAP58603
UniProt: A0A090AJI2
Position
complement(399156..403190)
AA seq 1344 aa
MIYSYTEKKRIRKNFGKRPQVLDVPYLLSIQLDSFQKFIEKDPKGQYGLEAAFLSIFPIK
SYNGNSELQYVSYRLGEPVFDVRECRIRGATYSVPLRVTLRLVIHNRDIISHSKKEIKIQ
EVYMGEIPIMTDNGTFVVNGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDHLFVRIDRRRKLPVTILMRALGYTSEEIIDIFFEKVKFEICQDNQLKM
QLLPERLRGETASFDIQVKNKVYVEKGRRITARHVRELEKDQIDHIEVPVEYILGKVSAK
NYIEKKTGEIILSANSSISLEIFNKLKSVGYSIIEIIFTNDLDHGSYMSDTLRIDPTNDR
MSALVEIYRMMRPGEPPTRETAENLFKNLFFSEERYDLSAVGRMKFNRSLQRKTIEGLGT
LNNIDIIDVIKKLIDIRNGKGEIDDIDHLGNRRVRSIGEMAENQFRIGLVRVERAVKERL
SLGDFENLLPQDMINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYAQTNEYGFLETPYRRVINGKV
SSEIRYLSAIEEGNYVIAQASAKMDDNSFFVDNLLICRHKGEFNLFNRDQINYMDVSTQQ
IVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLIGTGMERAVAIDSGVTLIAK
RGGIIKFVDSSNIVIKVNENEISPGEAGIDIYNLTKYIRSNQNTCINQKPCISLNEIVER
GDVLADGSSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACI
SRDTKLGAEEITADIPNVGESALAKLDESGIVYIGAEVIGSEILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTREGVQKDKRSLAIEEMKLNKIKKE
LLEEQKILEIGLLDRIKHILIKNSIKLDTIITNFPSDETIKKNIKNIKELQNVQQLIKQY
HDIKKEFKKRLEVQSKKIVQGDDLAPGILKIIKVYLAVKRQIQPGDKMAGRHGNKGVISK
INPIEDMPYDKDGIPVDIVLNPLGVPSRMNIGQILETHLGMAAYGIGEKINKILKEQQKV
IKLRKFIQRAYELGNNIRQKINFNSFSDNEILQLAKNLRKGLPIATPVFDGAKENEIKEL
LKLADLPTSGQIKLFDGHTGEEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP
LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKMYKNIVDDRHQMEPG
MPESFNVLLKEIRSLGINIELEDN
NT seq 4035 nt   +upstreamnt  +downstreamnt
atgatttactcctatactgagaaaaaaaggattcgtaaaaattttggaaaacgtccccaa
gttttagacgtcccttatcttctttctattcaattggattcttttcaaaaattcattgaa
aaagatccaaaaggtcaatatggattagaagctgcatttctttcaatttttccaattaaa
agttataacggtaattctgaattacaatatgttagttatcgtttaggagagcctgttttt
gatgtacgagaatgtcgtattagaggggctacatattctgtacctcttcgggtaacttta
cgtcttgtaattcataatcgtgatattataagtcattcaaaaaaagaaataaaaattcaa
gaagtatatatgggtgaaattcctattatgactgataatggtacatttgttgttaatgga
actgaaagggtagttgtttctcagttacatcgtagtcctggggtattttttgacagtgat
aaaggaaaaactcattcttctggaaaagttctttataatgctcgtattattccttataga
ggttcttggttagattttgaatttgatccgaaagatcatttatttgttcgtattgatcgt
agaagaaagctaccagtaacaattcttatgcgtgcattaggctatacgagtgaagaaatt
attgatatattttttgaaaaagtaaaattcgaaatatgtcaagataatcaattaaaaatg
cagctattaccagaaagattacgcggagaaacagcatcttttgacattcaagttaaaaac
aaagtgtatgtagaaaaaggacgccgtattactgctcgtcatgtgcgagaattagaaaaa
gatcagatagatcatatagaagttccagttgaatatatattaggcaaagtttctgcaaaa
aattatattgaaaaaaaaacaggtgaaataattttatcagcaaattctagtatttcttta
gaaatttttaataaattaaaatcagtgggttatagcattattgaaataatttttactaac
gatcttgatcatggatcttatatgtcagatacattacgtattgatcctacaaatgataga
atgagtgctttagtcgaaatttatcgtatgatgcgtcctggagaacctcctacgagagaa
acagctgaaaatttatttaaaaatcttttcttttcagaagaacgttatgatttatctgct
gttggacgtatgaaatttaatcgatctttgcaacgaaaaactattgaaggtttaggcacg
ttaaataatatcgatattatcgatgtcataaaaaaattaattgatattagaaacggaaaa
ggtgaaattgatgatattgatcatttaggaaatcgtcgtgtacgttctataggagaaatg
gctgaaaatcaatttcgtattggtttagttcgtgttgaaagagcagtgaaagaaagattg
tcattaggggattttgaaaatttactacctcaagatatgatcaatgctaaacctatatct
gcagctatcaaagaattttttggttcaagtcaattatcacaatttatggatcaaaataat
ccattatctgaaataacacataaacgtcgtatttctgcattaggaccaggtggtttaact
cgagaacgtgcaggatttgaagttcgtgacgttcatcctacacactatgggcgtgtttgt
cctatagaaactccagaaggtccaaatattggcttaataaattctttagcagtttacgct
caaactaatgaatatggttttttagaaacaccttatagacgtgtaataaatggtaaagta
tctagcgaaattcgttacctttctgctattgaagaaggtaattacgttatagctcaagca
agcgctaaaatggatgataatagtttttttgttgataatttattaatatgtcgtcataaa
ggagaatttaacttatttaatcgtgatcaaattaattatatggacgtttctactcaacaa
atcgtttctgttggtgcatctttaattccatttcttgaacatgatgatgctaatcgtgct
ttaatgggagcaaatatgcaacgtcaagccgttccaacactaaaagctgacaaaccatta
attggtactggtatggaacgtgctgtagcaattgattccggtgtaacattaatagcaaaa
agaggaggcattataaaatttgttgattcatcaaatatcgttattaaagttaatgaaaat
gaaatatctcctggtgaagcaggaattgatatttataacttaacaaaatatattcgttct
aatcaaaatacttgcataaatcaaaaaccatgtatttctttaaacgaaatagttgagcgt
ggtgatgttttagctgatggttcttccaccgatcttggggaattagcactaggacaaaat
atgcgtgtagcttttatgccttggaatggttacaattttgaagattctatattagtttct
gaaagagtggtgcaagaagatcgctttactagcattcatattcaagaattagcttgtata
tcaagagatactaaattaggagctgaagaaattacagctgatattccaaatgtaggtgaa
tctgcattagctaaattagatgaaagcggtattgtttatattggagcagaagtaattggt
agcgaaattttagtaggaaaagtcactccaaaaggagaaacacaactcaccccagaagaa
aaacttttacgtgctatttttggagaaaaagcttctgatgtgaaagattcttcattaaga
gtacctaatggggtatcaggtactgtaattgatgtacagatttttactagagaaggagtt
caaaaagataaaagatctcttgctatcgaagaaatgaaactcaataaaattaaaaaagaa
ctacttgaagaacaaaaaatattagaaataggtctattagatcgcataaaacatattttg
attaaaaattcaataaaacttgatacgataataactaattttccttcagatgaaacaata
aaaaaaaacattaaaaatattaaagaactacagaatgttcaacaattaataaaacaatat
cacgatataaaaaaagaatttaaaaaaagattagaagtacaaagcaaaaaaatagttcaa
ggggatgatttagctccaggaatattaaaaattataaaagtctatcttgctgtaaaacgt
caaattcaaccaggtgataaaatggctggtcgtcatggtaataaaggagtaatatctaaa
attaatccaatagaagatatgccgtatgataaagatggaattccagttgatattgtttta
aatccattaggtgttccttccagaatgaatattggacaaattttagaaactcatttagga
atggctgcttacggtattggagaaaaaattaacaaaattttaaaagaacaacaaaaagta
ataaaattacgaaaatttattcaacgtgcatatgaattaggaaataatatcagacaaaaa
atcaactttaattctttttcagataatgaaattcttcaattagctaaaaatctacgaaaa
ggtttaccaattgccacaccagtttttgatggtgcaaaagaaaacgaaataaaagaatta
ctaaaattagctgatttgcctacttcaggtcaaataaaactttttgatggacatacagga
gaagaatttgaacgtcctgttacagttggctatatgtatatgttgaaacttaaccattta
gtagatgataaaatgcatgcacgctctaccggttcatatagtttagttactcaacaacct
ttaggtggaaaagcacaatttggtggtcaaaggtttggtgaaatggaagtttgggcacta
gaagcatatggtgcagcatatacactacaagaaatgttaactgttaaatctgatgatgtt
agtggtcgtactaagatgtataaaaatattgtagatgatcgtcatcaaatggaaccaggt
atgccagaatcttttaatgttcttttaaaagaaattcgttctttaggtattaatattgaa
ttagaagataattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (36)   

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