KEGG   Staphylococcus capitis subsp. capitis: AYP1020_0413
Entry
AYP1020_0413      CDS       T03970                                 
Name
(GenBank) Ribonuclease J 1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
scap  Staphylococcus capitis subsp. capitis
Pathway
scap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AYP1020_0413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scap03019]
    AYP1020_0413
Messenger RNA biogenesis [BR:scap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AYP1020_0413
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2
Other DBs
NCBI-ProteinID: AKL91561
Position
complement(396534..398273)
AA seq 579 aa
MKQLHSNEVGVYALGGLGEVGKNTYAIEYKNEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
EQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLIRNKLEEHHLLRTTELH
EIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGEPANIAK
MAKLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINNIPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGQTGVECGVDEDNVFIFDIGD
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNGNKDIQWHQIKSSIIETLQPYLY
EKTARRPMILPVIMKVNEDKGNNKPSNKKNNKQDKNESK
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgaagcaattacattctaatgaagtaggtgtgtatgcacttggtggtttaggtgaagtt
ggtaaaaatacctacgccatcgagtacaagaatgaaattgttatcattgatgcaggtatt
aaattcccagatgataacttactaggaatagattatgttattcctgactacacttactta
gaacagaaccaagacaaaattgtaggtctgtttattactcatggacacgaagaccatata
ggtggtgtgcccttcctattaaaacaaattaatgtacctatttacggtggtccattagca
ttaggtctcatacgcaataaattagaagaacatcatttacttagaactactgagttacat
gaaattgatgagagtagtgtaataaaatctaagcattttgaaatatcattctatttaact
actcatagtattcctgaagcatacggagttatcgttgatacaccagaaggtaaaattgtt
catactggcgactttaagtttgatttcactccagttggagagccagctaatatagctaaa
atggctaaacttggagaagaaggcgtactatgtttattatctgactcaacaaattcacta
gtacctgattttacgcttagcgaacgtgaagttggacaaaacgttgataagatttttaga
aattgcaagggccgtatcatttttgcgaccttcgcatctaatatttatcgtgtacaacaa
gcagttgaagcagcgataaagtataatcgtaaaatcgttacttttggtcgttcaatggaa
aataacataaaaattggtatggagcttggatatattaaagcaccacctgaaacatttgtt
gaacctaataaaattaacaatatacctaaacacgaattgttaattctttgtactggttca
caaggtgaaccaatggctgcattatcaagaattgcaaatggtacacataaacaaatcaaa
attatacctgaagatactgttgtattcagttcatctcctattccaggtaacactaaaagt
atcaatcgcactataaatgctttatataaagctggtgcggatgtcattcacagtaagatt
tcaaatattcacacgtcaggtcatggttcacaaggtgaccaacaattgatgctacgttta
attcaacctaagtatttcttacctattcatggtgaatatcgtatgttgaaagcacatggt
caaacgggtgttgaatgtggtgtagatgaggataatgtatttattttcgatatcggtgat
gtcttagctttaacacatgattcagctcgtaaagctggaagaatcccatcaggtaatgtg
ttagtagacggtagcggtattggagatatcggaaatgtagttattagagatcgtaaacta
ctttctgaagaaggtttagtcattgttgttgtaagtatcgattttaatactaataagtta
ttatcaggacctgatatcatttcacgtggctttgtttatatgcgcgaatccggtcaactt
atttatgacgcacaacgtaaaattaaaacagacgtgatatctaaattaaatggtaacaaa
gatattcaatggcatcagattaaatcatcaattattgaaacacttcaaccttatctatat
gaaaagacagctcgtagaccgatgattttaccagtaattatgaaagtgaatgaagataaa
ggtaacaataaaccttctaataagaaaaataacaaacaagataaaaatgagtctaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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