KEGG   Parasphaerochaeta coccoides: Spico_0613
Entry
Spico_0613        CDS       T01469                                 
Name
(GenBank) RNA binding S1 domain protein
  KO
K02945  small subunit ribosomal protein S1
Organism
scc  Parasphaerochaeta coccoides
Pathway
scc03010  Ribosome
Brite
KEGG Orthology (KO) [BR:scc00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    Spico_0613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:scc03011]
    Spico_0613
Ribosome [BR:scc03011]
 Ribosomal proteins
  Mitochondria/ Chloroplast
   Small subunit
    Spico_0613
  Bacteria
    Spico_0613
SSDB
Motif
Pfam: S1 PCB_OB Spt6_S1 S1_2 RNase_II_C_S1 DUF4108 MRP-S35
Other DBs
NCBI-ProteinID: AEC01841
UniProt: F4GK69
Position
707678..709393
AA seq 571 aa
MAEEKQTDEKTSMSLMESLLEHDVFKSLDEIEDGTLVTGTVIQVNNEYVFVDVGYKSEGR
IPLDEFDVIPEDGEKVKVFIITKDGKGGQIQISKRRAVTLEKTEDLRKAAEDRSPVLGKF
VKVIKGGYEIDLGGEYRGFCPMSKADVSRVEDPESLIGLSDYFIIDKFHAGTKLKSVVSR
REYLEKRIKENKETFFSSVHIGDVVQGVVKSFTSFGAFIDLGGFDGLLHINDMSWGHVTR
PKDFVKKGQTIELRLINIDPETQKVNLSLKHMHEDPWSSFEKNFNVGDVVKAPVTKLTTF
GAFIEIAPGIEGLAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLKQLE
ENPWDSIDDRYPVGKTLTRPVVKITNSGAFIGLEDGIDGFLHIDDISWTEKVRNMSSFAK
EGDMVDVVVTRVEPENRRIRLSVKQLEDNPWNTLKKDYPKYSSISGEVTNVTDFGVFVKV
LGGIEGLISKFHLVGPDEEYNDSVLKNFKVGDVVTAAVMDVNPSTQKLSLSIKELIRNAQ
RSEISKYMDDEDEGDTFTFGDMLRSKDEEDN
NT seq 1716 nt   +upstreamnt  +downstreamnt
gtggctgaagagaaacaaacagatgaaaaaacatcaatgtccttgatggaaagcctgcta
gagcacgatgtttttaaatctcttgatgaaattgaagacggtacgctcgtaaccggtact
gttatacaggtgaataacgagtatgtgttcgttgatgtcggttataagtccgagggacgt
attcccctggacgaatttgatgtcattcctgaagatggtgagaaggtcaaggtcttcatc
atcacgaaagacgggaagggcgggcagattcagatttccaagcgtcgcgccgtgacattg
gaaaaaaccgaagacttgcggaaagcagcggaagacaggtctcctgtgctgggcaagttc
gtcaaagtcatcaagggtggttatgagattgatctcggcggtgaataccgtgggttctgc
ccgatgtccaaggcggacgtttcccgcgtcgaggatccagagtccttgataggtctttcg
gattatttcatcattgacaagttccatgccgggacaaagctgaaaagcgttgtgtctcgc
cgtgaataccttgagaagcgaatcaaggagaataaggaaacctttttctcctcagtccat
atcggcgatgtggtccagggcgtagtgaagtcattcacgtcctttggtgctttcattgac
cttggcggttttgatggtcttctccatatcaacgacatgagctggggtcatgtgacacgc
cccaaggatttcgtgaaaaaagggcagacgattgaattacgcctgattaacattgatccc
gaaacgcagaaggtgaacctttccctcaagcacatgcacgaggatccatggtcttctttt
gaaaagaatttcaatgtgggcgatgtcgtcaaggctccggtaacaaaactgaccactttt
ggtgctttcatagagattgctcctggaatcgaaggccttgcgcatatttctgaactgtcc
tggacaaaacgggtcaacaatcccaaggatgtcctggatgtcggtgatgtggttgaggca
aagatacttgggtatgacttggacaagaaacgtgtttcacttggactgaagcaacttgag
gaaaatccttgggatagcattgatgaccgctacccggttggtaagacactgacccgtccc
gtggtcaagataaccaatagtggagcattcatcggacttgaggatgggatagatggtttc
ctccatatcgatgatatttcttggacggagaaagtgcgcaacatgtcttcctttgccaag
gaaggggatatggtcgatgttgtcgtaacccgtgttgagcctgagaaccgtcgcatacgg
ctgagtgtcaagcagcttgaggacaatccttggaatactctcaagaaggattatcccaaa
tattcctccatttccggcgaagtgaccaatgtcactgattttggtgtgttcgtaaaggtt
ctgggaggaatcgaaggtttgatcagcaagtttcatcttgtcggtcccgatgaagaatat
aatgacagcgtcttgaagaacttcaaagtcggagatgtcgtcacggcagccgtcatggac
gtgaatccttctacacagaagctttccctttccatcaaggagttgattaggaatgctcaa
cgctctgagatttccaaatacatggatgacgaagatgaaggggataccttcacctttggt
gacatgcttcgctccaaggatgaagaagacaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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