KEGG   Saccharomyces cerevisiae (budding yeast): YDR404C
Entry
YDR404C           CDS       T00005                                 
Symbol
RPB7
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03020  RNA polymerase
sce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YDR404C (RPB7)
  09124 Replication and repair
   03420 Nucleotide excision repair
    YDR404C (RPB7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YDR404C (RPB7)
   03019 Messenger RNA biogenesis [BR:sce03019]
    YDR404C (RPB7)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YDR404C (RPB7)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     YDR404C (RPB7)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     YDR404C (RPB7)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      YDR404C (RPB7)
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25 MSSS
Other DBs
NCBI-GeneID: 852013
NCBI-ProteinID: NP_010692
SGD: S000002812
UniProt: P34087
Structure
Position
IV:complement(1276654..1277169)
AA seq 171 aa
MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR
ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLT
FNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLGAI
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttttttattaaagacctttcgcttaatattacccttcatccgtcctttttcggtcct
cgaatgaagcaatatctaaagacaaaactattggaagaggttgaaggttcgtgtacgggt
aaattcggatatattctttgtgtcctagactatgataatatagatattcaacgtgggaga
atattgcccacagatgggtccgccgagttcaacgtgaaatatagagctgtagttttcaaa
ccatttaaaggggaagtagtggacggcacagtcgtttcatgttctcagcacgggttcgaa
gtgcaagtaggtccaatgaaagtatttgtgacaaagcatctgatgcctcaagatttaacc
tttaatgcgggttcaaacccaccatcataccaaagttccgaggatgtcatcaccataaaa
agtagaattagagttaaaattgaaggttgtatcagtcaagtgagttctattcacgcaatc
ggtagtatcaaagaagattatttgggtgctatttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (98)   
   PDB (98)   
Protein domain (4)   
   Pfam (4)   
All databases (124)   

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