KEGG   Sorangium cellulosum So ce56: sce0410
Entry
sce0410           CDS       T00634                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
scl  Sorangium cellulosum So ce56
Pathway
scl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:scl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    sce0410 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scl03021]
    sce0410 (rpoB)
   03400 DNA repair and recombination proteins [BR:scl03400]
    sce0410 (rpoB)
Enzymes [BR:scl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     sce0410 (rpoB)
Transcription machinery [BR:scl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     sce0410 (rpoB)
DNA repair and recombination proteins [BR:scl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      sce0410 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: CAN90567
UniProt: A9GRB1
Position
587152..591288
AA seq 1378 aa
MPSVVQSNFRVRKNLGRVRRIIDVPNLIDIQKSSYDKFLQMSVPPNEREEVGLQAVFRSV
FPIKDFNGTSELVFVSYNLEPPKYDVDECRQRGMTYSAPIKVTNQLMIYDTRDGGERIVR
DIKEQEVYFGELPLMTETGTFIINGTERVVVSQLHRSPGVFFDHDKGKTHSSGKLLYSAR
VIPYRGSWLDFEFDPKDIIYVRIDRRRKMHATVLLRALGYSTQDLLNYFYSTETVYLEKG
GKYAKSIEYDLLAGQRTTRDIKIGNDVIVKKNTKFTRAAIRKMKEAKLERLSLEPEELVG
KVAAHDIVDPETGEVVVEVNEELTEAKLERLRDANIEQFRILFIDGLNVGSYLRDTLLTD
KVKTMEDSILEIYRRLRPGDPPTLETAKTLFHNLFFNAERYDLSKVGRLKLNYKFYRDVP
EDERPGLDLTVLTPQDILETVRHLIELKNGRGSVDDIDHLGNRRVRAVGELMENQYRIGL
VRMERAIKERMSMSQEIDTLMPHDLINAKPVSAVVKEYFGSSQLSQFMDQTNPLSEVTHK
RRLSALGPGGLTRERAGFEVRDVHATHYGRICPIETPEGPNIGLIASLSTFARVNEFGFV
ETPYRKVENGRVTEDVIWLSALEEEGKYIAQATVNLDEGGRFKESLVSARYNGEFKIVTP
EMVELMDVAPNQMVSVAAALVPFLEHDDANRALMGANMQRQAVPLVQSHAPLVGTGMEER
LARDSGVCVIARRPGVVESVDATRIVVRAEGEGAEVPDIYHLMKFQRSNQSTCYTQKPVV
RTGEVVKKGDVLADGPSTDMGELALGQNVLVAFMPWQGYNFEDSILVSERIAKDDVFTSI
HIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDDSGIVRIGAEVRPGDILVGKITPKG
ETQLSPEEKLLRAIFGEKAGDVRDSSLKVPPGVGGIVINARVFSRKGTEKDDRARDIEDQ
ERARIERTRDEEIKILRDSFFRRIRELLLGKEATGKLVDDKGKVLFQKGAIIDEPSLAEI
PRKYWGEIPVDDAERVQQILRDLEELVRTREEHFRDKIDRLSKGDELPPGVIKMVKVYIA
IKRKLQVGDKMAGRHGNKGVISRILPEEDMPYLQDGRPVDLVLNPLGVPSRMNVGQILEI
HLGWGAFELGNQLQRMIEQQRASAEIKEHLKAIYAGDETMNGFFDNLDDGDVKRFVKTVD
EGVFMGSPVFDGAHESDIKGALDLAGLPTSGQAILFDGRTGDAFDQNVTVGIMYMLKLHH
LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDD
VMGRTRMYEAIVKGDYTLEAGLPESFNVLIKELQSLCLNVELVETSAGVEASAAEEEE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atgccgtcggtcgtccaatccaacttccgcgtccgtaagaacctgggtcgcgttcgtcgc
atcatcgacgtccccaacctgatcgacatccagaagtcgagctacgacaaattcctccag
atgagcgttccgccgaacgagcgggaggaggtcgggctgcaggcggtgttccgctcggtc
ttcccgatcaaagacttcaacggcacgagcgagctcgtcttcgtctcgtacaacctcgag
ccgccgaagtacgacgtcgatgagtgccgccagcgcggcatgacctactcggcgccgatc
aaggtcacgaaccagctgatgatctacgacacccgcgacggcggggagcggatcgtgcgc
gacatcaaggagcaggaggtctacttcggcgagctcccgctgatgaccgagacgggcacg
ttcatcatcaacggcaccgagcgcgtcgtcgtcagccagctgcaccggagccccggcgtc
ttcttcgatcacgacaagggcaagacgcactcgagcggcaagctgctctactccgcgcgc
gtcatcccgtaccgcggctcgtggctcgacttcgagttcgacccgaaggacatcatctat
gttcgcatcgatcgccggcggaagatgcacgcgacggtgctgctgcgcgcgctcgggtac
tcgacgcaggacctgctgaactacttctactcgaccgagacggtgtacctcgagaagggt
ggcaagtacgcgaagagcatcgagtacgatctcctggccggccagcggacgacgcgcgac
atcaagatcggcaacgacgtcatcgtcaagaagaacaccaagttcacccgcgccgccatc
cggaagatgaaggaggcgaagctcgagcggctcagcctcgagccggaggagctcgtcggg
aaggtcgcggcgcacgacatcgtcgatccggagaccggcgaggtcgtggtcgaggtcaac
gaggagctcaccgaggcgaagctcgagcggctgcgcgacgcgaacatcgagcagttccgc
atcctcttcatcgacggcctgaacgtcggctcgtacctccgcgacacgctgctcaccgac
aaggtgaagacgatggaggactcgatcctggagatctaccggcggctgcggccgggcgat
ccgccgacgctcgagaccgccaagaccctgttccacaacctgttcttcaacgccgagcgt
tatgacctgtcgaaggtcggccggctgaagctgaactacaagttctaccgggatgtcccc
gaggacgagcggccggggctcgacctcacggtgctcacgccgcaggacatcctggagacc
gtgcgtcacctgatcgagctcaagaacgggcgcggctcggtcgacgacatcgaccacctc
ggcaaccgccgcgtgcgcgcggtcggcgagctgatggagaaccagtaccgcatcggcctc
gtccgcatggagcgcgcgatcaaggagcgcatgagcatgtcgcaggagatcgacacgctc
atgccccacgatctgatcaacgcgaagccggtcagcgcggtcgtgaaggagtacttcggg
agctcccagctctcgcagttcatggaccagaccaacccgctctcggaggtcacccacaag
cgccgcctctcggcgctcggcccgggcggcctgacccgcgagcgcgccgggttcgaggtg
cgcgacgtccacgcgacccactacggccgtatctgccccatcgagacgccggaaggtccg
aacatcggcctcatcgcctcgctgtcgacgttcgcccgcgtgaacgagttcgggttcgtc
gagacgccgtaccggaaggtcgagaacggccgggtgacggaggacgtgatctggctctcc
gcgctcgaagaggagggcaagtacatcgcgcaggcgaccgtgaacctcgacgagggcggt
cgcttcaaggagtcgctggtctcggcccgctacaacggcgagttcaagatcgtcacgccc
gagatggtcgagctgatggacgtcgcgccgaaccagatggtgtcggtcgccgccgcgctc
gtgcccttcctcgagcacgacgacgcgaaccgcgcgctcatgggcgccaacatgcagcgt
caggccgtgcccctcgtccagtcgcacgcgcccctcgtcggcaccggcatggaggagcgg
ctcgcccgggactccggcgtctgcgtcatcgcgcggcgccccggggtcgtcgagagcgtc
gacgcgacgcgcatcgtcgtccgcgccgagggcgagggcgccgaggtgcccgatatctac
cacctcatgaagttccagcgctcgaaccagtcgacctgctacacgcagaagccggtcgtc
aggacgggcgaggtggtgaagaagggcgacgtgctcgccgacggcccgtcgacggacatg
ggcgagctcgcgctcggccagaacgtgctcgtcgcgttcatgccgtggcagggctacaac
ttcgaggactcgatcctggtctcggagcgcatcgccaaggacgacgtgttcacctcgatc
cacatcgaggagttcgagtgcgtcgcccgcgacacgaagctcggcaaggaggagatcacc
cgcgacatcccgaacgtcggcgaggaggcgctcaaggacctcgacgactccggcatcgtg
cgcatcggggccgaggtgcggccgggcgacatcctggtcggcaagatcacgccgaagggc
gagacccagctctcgcccgaggagaagctgctccgggcgatcttcggcgagaaggccggc
gacgtccgcgacagctcgctcaaggtgccgcccggcgtcggcgggatcgtcatcaacgcc
cgcgtgttctcgcgcaaggggaccgagaaggacgaccgcgcgcgggacatcgaggatcag
gagcgggccaggatcgagcggacgcgcgacgaggagatcaagatcctccgcgactcgttc
ttccgccgcatccgcgagctcctcctcggcaaggaggcgacaggcaagctcgtcgacgac
aagggcaaggtgctcttccagaagggcgccatcatcgacgagccctcgctcgccgagatc
ccccgcaagtactggggggagatccccgtggacgacgccgagcgggtccagcagatcctg
cgcgacctcgaggagctcgtccgcacgcgcgaggagcacttccgcgacaagatcgatcgc
ctctccaagggcgacgagctgccgccgggcgtcatcaagatggtgaaggtctatatcgcc
atcaagcgcaagctccaggtcggcgacaagatggcgggccgccacggcaacaagggtgtc
atcagccgcatcctccccgaggaggacatgccgtatctgcaggacggcaggccggtcgac
ctcgtgctgaacccgctcggcgtgccgagccgcatgaacgtcggtcagatcctcgagatc
cacctcgggtggggcgcgttcgagctcggcaaccagctgcagcggatgatcgagcagcag
cgggcgagcgccgagatcaaggagcacctgaaggccatctacgcgggcgacgagacgatg
aacggcttcttcgacaacctcgacgacggcgacgtcaagcgcttcgtcaagacggtcgat
gagggcgtgttcatgggatcgccggtgttcgacggcgcgcacgagtcggacatcaagggc
gccctcgatctcgcgggtctcccgacctcgggccaggcgatcctcttcgacgggcgcacg
ggcgacgcgttcgatcagaacgtcacggtgggcatcatgtacatgctgaagctccaccac
ctggtcgacgacaagatccacgcgcgctcgatcgggccctactcgctcgtcacgcagcag
cccctcggcggcaaggcgcagttcggcgggcagcggctcggcgagatggaggtctgggcg
atggaggcctacggcgcggcctacgcgctgcaggagttcctcaccgtgaagagcgacgac
gtgatgggccgcacccggatgtacgaggccatcgtgaagggggactacaccctggaggcg
gggctgccggagagcttcaacgtgctcatcaaggagctccagtcgctgtgcctcaacgtc
gagctggtcgagacgagcgcaggggtggaggcgtcggccgcggaggaagaggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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